MmuINT0055812 @ mm10
Intron Retention
Gene
ENSMUSG00000026921 | Egfl7
Description
EGF-like domain 7 [Source:MGI Symbol;Acc:MGI:2449923]
Coordinates
chr2:26585585-26589169:+
Coord C1 exon
chr2:26585585-26585675
Coord A exon
chr2:26585676-26589044
Coord C2 exon
chr2:26589045-26589169
Length
3369 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
CAGGAGACATTTTGCCTTAGGCC
3' ss Score
2.21
Exon sequences
Seq C1 exon
CCCCCGGCAGCAGCAAGACGCTGGCTGTTCCACCTGCCCACAAGAACAGCCACCACCAGTACCCAGGGGATGACTAGCGGCCGGACCACAG
Seq A exon
GTGAGTCCCCAGTAAACCTTCTGGGCAGCAGCCAGGAGTCCTGCCTTGCAGGGAGCATGCACAGGAACGTGTAAACCAAGGCACGGCTAGGGTTGGAGAAATTAACAAGGCTTAGGCACCCAAAGAGCTGGGACAATTACAGAAGCAGCAGAAGTGGAGACTGGGAGAGAGAAAAGATGACCAATCCAGAAGTGGAGGGTTGTCAGCTCATATGACGCCAGGGAAAGTGGCCAAGGGTGTCAGCAGAGAGCCCATGTCTGCCAAGGAGGCTTGCGCTCACACCTAGATCTCATCTGTACTCAGCCCAGTGATCTCAGTCTAGTATTGTGGCTGGGTGTGTCATGATGCCCACCTTTTGCATGGCTCGAGGACCAGTCTGACTGGGGGGGTGGGGGTGGGGTGTTTCGAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCATTTTGTAGACCAGGCTGGCCTCAAACTCAAAAATCCACCTGCCTCTGCCTCCCGAGTGCTAGGATTAAAGGCGTGCGCCACCATGCCCGGCTTCGTCAGGCATCTTGTTGTAGTCTTCTAATACCATTCAGGAGCAAGTCATCAGTCAGGAGGCTCGAGAGTTAGCTAAATCCTTGTGGGAGCCATTCATGGCTTCCTGACTCCTAGAACTTGTTTAATCCTACAACCCCCCATCAGTCACGTGATCCCTCTGCAGGCCTGGGATCAGTCAGGATGTACAAAGGAGGCTCGCAAGGCGGCACTTAGAGGCTGGGTTGCATCTAGATCACCTAGGTCTGACTTACTCGCTATAATACTAGGGAAACTGCCGCTGCACAGACTCAGTTTTGCCATCCGCGAAATGGGGACGAGCACATCGGGGAGCCCGTGGGGCTGGGGTAGGGCTCCGACGCAGCTATCAGGTGGGGCGGGGCCGAGGGCGGGGCGGGGCGGGGCTCGGGTCCCCCACAGCGCGGCGGCAGCGGCGGTGGCGGCGCGTGCGCGCCCCGGACCGCGCGGTGAGTGCGGAGATAGCCCGGGCACCAGGGGCGAGGGTATGGAGGCAGCCCGGGCGGGGCAGGGGTGACCCGGACTGTCGGGTGCCGAGATCGGGGGCGGCCACTCAGGCAACTCCGGGCGATCGCAGGGACCGGAGAGGTGAGCGCGCGAGAGCCATGGCTGAGCCGCGCTTGGACCCCACGCCCCAGCCTAGGTCCTGCAGCCGCCGGGAAAATGAGCCCAGCGGTCCTGAGAAATGGCGACCCCTGCCGGCGGCCGGAGCGCCTCTCCCCTTACCCATCTTGGCTATACGACCCCCACCTGGTCACAGCACCCCATAGCGTAGCTCAGTCCGGTCGGTCGTCCTGGGTCAGGGGTGGGGGTTGCCACACTCTCCCCTACCGCCATGGAGCCTGGGAGGGAGCAGGGTCCGGGCCATGGAGAGGACGCCCCCACCGAATCTGATCACCGAACCTGTCTGGTCTCCACACCAATCTGTGGGCGCTGATGTCTAGACACTACTGTAGCAAAGGGACCCAGGGCCCTCTCACTATGGTGTCCAGATCCCCCCTCTGCCGCCACAGCACCGCACACTCCCTCCCGGTAGGGGGCTGTTGAGTCGTAGGTGGGAAGGGAGGATGGCTGGCTGCTAGGGCCCATGGTGATACTTAATGGTTCAAGATTACTTGTAAACCTGCAGGCCACATCACAGCCTAATGCGTGGCTCACCCAGTAGCTGAGCACCAAAGGAAATGAACTTCCAGCCCAGGGCTGCTTTGGCCTCTTCTGCCCTTGGGCAAAACATGACTTTTCAAAAATTGTTTCTCTTGCTTTAAAACACAGTCCCCTTTCTAGACAGCTTATCTCTGGGAAGATTTGTGGGGGCAACGATATCTGGAGGGAAACCCTCCAGGCGCCAGGCACACAAGGATGGTAGACTTCTGACGCCCTCCCGCCCATGCCACATGCTGACTTATCTTTCTGGGTACTATTCCTCAGGATCACTTGGTTTTTGCTTGGCAGGGTAATTCTTACCCGCTGAAGGTGCCCTCCCCCCTCGGGGTTAACTCAGCTCAGACAGATTGCCACATATACCCCTGCCCAGGTATTTCCCTATGGTCTTCTTGCCCCCACATTAAGTCTCAATTACTCATCTCAAAGCCCCCTGCCTTCCTGCTTTGCTTCAACAAATATGAGGTTCAGCAAAGAGGCTCCTGGCCTAGGACTGCAGCGCAGGGCTGAATAGACAGAGTGAGAAGTGGGAAGGATCTTGCTTGAAGAGGGGCTTGGCCAGCAGCTAGAGCTCAGAAACTATTTAATATCACCACTGTTTACTCTACCAGAACTACTGATGGCTACCAGCCTTGATACCCTAGTGATGTCTTTAAGAAAACTGAGTCTCAAAGTAAGGGATTAGCTTGGGCTCATTTACACATGTTCCCTGGCCCCTTCCTTTCTGATAGGGGGTTCTGTAGGGTTGTATGGGGCGTGGGGTGGGTAGGTGGAGCTGCCTCTTTAAGAAGCCCTGAGAAGAGCCCTGAGTGGAGCCCCGTCAGCCACCTGCCCCCGACTCTGTGTAGGACAGTGAGACAGCTGTCCGTCCCCTTGCACATGTCTGACCCAGCACTTCAGCACTATCACAGACTTTAGATCTGGGGACATTCCTCAACAGCCTTCCTGCCTCTTAACACAGCCAGAAGAGGGCTGGAGATGGGCTCCAAAGGCGGTGGGGGGGGGGGGGAGGTTCCCCAGGGGTAAGCACATGAGGGCCACTGCCCTTGCAGGTGGGAGGTGTTTGTACACATGCTCTGGTCCACGAGTGGTGCCCTGTGAGCTGTAGATCCCCTTGCTGCTCAGATTATTCACACCCCACAAGGGCCTTGCCTGTGTTCACCTAGAGGTAGCTGACATTTGTGTACTGTGAAATCCATAGTGCCCTGGGGCTTGCCAAGCCTTTGCCAAACGGGCACATAGGATGGCGAGTTTCCTGCTGCACTGGATTCTGCTCCATCCACAGCATTCCTTTTCCGACAGTGAGAGATACCAGAAAGCCCTCACTCCTGCTCAGGGGGAGGACTGGCTTGGTTGCTCACTCTGCCCAGGCCCCGCCCAGAGCCTCAGGGGTTGCCTCTGACCCTAGCAGGACTCAGGTTTCTCCTTCCCCAGGAGTCCTGGTCAGCAGGCCTAGCTCTCTGTGGTTGATAAGGGACCAGCTGAGCTGGTAGAGATGGGCCAGAGGCAGGAGAGAGCTGTCACTGCCTTTGAATGCTATCCCTGGGATAGGGGTGGCTTCAGAACCCAGGAAGTGGCCAAGGGCACAGACTCTGCTGGAGGCCTGAGCCGGGGGTTCCATAGGAGACTGACAGGAGACATTTTGCCTTAG
Seq C2 exon
GCCACAAAAAGAAGAAGGCTACCCCACTTACAGATGCAGACCATGTGGGGCTCCGGAGAACTGCTTGTAGCATGGTTTCTAGTGTTGGCAGCAGATGGTACTACTGAGCATGTCTACAGACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026921:ENSMUST00000166920:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF075468=EMI=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types