MmuALTD0008764-1/2 @ mm9
Alternative 5'ss
Gene
ENSMUSG00000036850 | Mrpl41
Description
mitochondrial ribosomal protein L41 [Source:MGI Symbol;Acc:MGI:1333816]
Coordinates
chr2:24829637-24831374:-
Coord C1 exon
chr2:24831274-24831374
Coord A exon
NA
Coord C2 exon
chr2:24829637-24830201
Length
0 bp
Sequences
Splice sites
5' ss Seq
GGGGTAAGA
5' ss Score
7.83
3' ss Seq
TGCCTTCCTTGTTCTTTCAGAGC
3' ss Score
12
Exon sequences
Seq C1 exon
CACAAGAGCAAAGCAGAACAGAGAAGAAGGAGGCAAGCGACAGGGAAATGTGACCAGCTAGAGGGTGGGCCTCACCCGAGCGGAGTGATGTAGGCAAGGGG
Seq A exon
NA
Seq C2 exon
AGCTGATTTATCCAGAGCCCAGCATGGGTTTCCTGACTGCCGTGACTCAAGGCCTGGTGCGGGGAGCTGACAGGATGAGCAAGTGGACAAGCAAGCGGGGACCACGCACCTTCACTAAGAGTCGGGGTGCCAAGAAAACAGGCATCTATACTTCTGATAGGAAGTTTGTGCAAATAAAAGAAATGGTTCCAGAATTTGTCGTCCCGGACTTGACGGGCTTCAAGCTCAAGCCCTACGTTAATTACCGAGCTCCTGCAGGCATAGACACACCTCTGACCGCCAAAGCGCTCTTCCAGGAAACAGTTGCACCCGCTATCGAAAAAGACTTTAAAGAAGGGACATTTGATGCTAACAACCTGGAGAAATACGGCTTCGAGCCCACACAGGAAGGCAAGCTGTTCCAATTATATCCTAAGAATTTCCCACGCTAGAAGACCATGAGAGAGGCCAAAAGTTTGTCTACAAAGTGGAGACAGTACTGACCAAGCCTTGGATTCTTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036850-0-0,1-0-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF098094=MRP-L27=WD(100=83.1)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCGACAGGGAAATGTGACC
R:
CTTGAGCTTGAAGCCCGTCAA
Band lengths:
297-522
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: