Special

MmuEX0032955 @ mm9

Exon Skipping

Gene
ENSMUSG00000026790 | Odf2
Description
outer dense fiber of sperm tails 2 [Source:MGI Symbol;Acc:MGI:1098824]
Coordinates
chr2:29745240-29747796:+
Coord C1 exon
chr2:29745240-29745441
Coord A exon
chr2:29746286-29746522
Coord C2 exon
chr2:29747706-29747796
Length
237 bp
Sequences
Splice sites
3' ss Seq
CTCCCTCCCCACTTTGGCAGGAC
3' ss Score
8.01
5' ss Seq
CAGGTACAG
5' ss Score
8.68
Exon sequences
Seq C1 exon
GAAACCCGAGAGGCTCCGGGGGGGGTTTGAACTGGCCAATGGGCGAGCTGCCGACCGGTTGTCGGAAAAGGAGGCGGAAGCGGGGAGGAGCCGCCGCGGGAGCCGGACTGCATCCGCCGCGGCGTCTCCATGGCACGACCCTGGCCTCCGACTTCAACGACTTCATAAGGAGACGGTTCTGGGCGCAGCCGTGCCGCTCTTG
Seq A exon
GACAGTTGCTGTGCGACTTGGACAGTAGAGGAGCGCCTCCCAAGTTTTCATCCAACTGCCACCCCCAAAGCTTCCACCCTCCTCCCCTCAGAGAGAGGACGTTTGATGCCCGGCCCCTGAGATTCTCATTGGCCAGCCCCTCTGGGTCCCCCTGAGCAGAGCCTGCCGACCCAATTGCCCATCTTTGCGGCTTTGATGCTTAACCATGTCTGCCTCATCCTCAGGCGGCTCCCCCAG
Seq C2 exon
GTTTCCATCGTGTGGGAAGAACGGAGTAACGAGTCTCACACAGAAAAAAGTCTTGAGAACACCTTGTGGCGCACCCAGTGTAACTGTTACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026790-'1-21,'1-17,4-21
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact





	

	
Alternative protein isoforms (No Ref, Alt. ATG)





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.556 A=0.776 C2=0.674
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
NO

							
A:
NO

							
C2:
NO

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000109394





     
                   









    
Main Skipping Isoform:
ENSMUSP00000109396





     
      









    
Other Inclusion Isoforms:
ENSMUSP00000028128, ENSMUSP00000109391, ENSMUSP00000109392, ENSMUSP00000109393, ENSMUSP00000109395
          









    
Other Skipping Isoforms:
ENSMUSP00000117887
  



Associated events







Other assemblies


mm10




Conservation


Human
(hg38)
chr9:128457198-128457437 
ALTERNATIVE
HsaEX0044592
(ODF2)
Human
(hg19)
chr9:131219477-131219716 
ALTERNATIVE
HsaEX0044592
(ODF2)
Rat
(rn6)
chr3:8451296-8451527 
ALTERNATIVE
RnoEX0062090
(Odf2)
Cow
(bosTau6)
chr11:99048584-99048816 
ALTERNATIVE
BtaEX0025316
(ODF2)
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
GGGGGTTTGAACTGGCCAATG

				
R: 
CAGTTACACTGGGTGCGCC

				
Band lengths: 
268-505

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






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