HsaEX0044592 @ hg38
Exon Skipping
Gene
ENSG00000136811 | ODF2
Description
outer dense fiber of sperm tails 2 [Source:HGNC Symbol;Acc:HGNC:8114]
Coordinates
chr9:128456006-128459657:+
Coord C1 exon
chr9:128456006-128456255
Coord A exon
chr9:128457198-128457437
Coord C2 exon
chr9:128459567-128459657
Length
240 bp
Sequences
Splice sites
3' ss Seq
ATTTCCCCCTACTTTGGCAGGAC
3' ss Score
7.57
5' ss Seq
CAGGTATTG
5' ss Score
8.35
Exon sequences
Seq C1 exon
TGGCGGGGCGGGGCATCTCTGTGACGCTAGGGGCTGGGCCTCGATGGCGAAACCCAAGCGGCTCCCGGGGGGGTTTGAACTGGCCAATGGGCGAGCTGCCGACCGGGTGTCGGAAAAGGAGGCGGAAGCGGGGAGGAGCCGCTGCCAGAGCCAGACTGCATCCGCCGCGGCGTCTCCATGGCACGACCCTGGCCTCCGACTTCAACGACTTCATAAGGCGGCGTTTCTGGGCGCAGCCGTGTCGCTCCTG
Seq A exon
GACAGTTGCTGTGCGACTTGGACAGTAGAGGAGCGCCTCCCAAGTTTTCATCCAACTGCCAACCCCAAAGCTTCCACCCTTCTCCCCTCAGAGAGGACGTTTGATGCCGGGCCCCTTGAGAGGCTCATTGACAAGCCTGCCCCTCTGGGTCCCCCTGAGCAGAGCCTGCTGACCCAATTGCCCACCTTTGCGGCTTTGATGCCTAGCCATGTCTGCCTCATCCTCAGGCGGCTCCCCCAG
Seq C2 exon
GTTTCCATCGTGTGGGAAGAACGGAGTAACGAGTCTCACGCAGAAAAAGGTCTTGAGAGCACCTTGTGGCGCACCCAGTGTAACTGTGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136811-'2-17,'2-14,8-17
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
Show structural model
Features
Disorder rate (Iupred):
C1=0.582 A=0.843 C2=0.624
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTCTGTGACGCTAGGGGC
R:
CCACAAGGTGCTCTCAAGACC
Band lengths:
305-545
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development