BtaEX0025316 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000030567 | ODF2
Description
outer dense fiber of sperm tails 2 [Source:HGNC Symbol;Acc:HGNC:8114]
Coordinates
chr11:99047352-99050255:+
Coord C1 exon
chr11:99047352-99047452
Coord A exon
chr11:99048584-99048816
Coord C2 exon
chr11:99050165-99050255
Length
233 bp
Sequences
Splice sites
3' ss Seq
CCACCCCCCAACTTTGGCAGGAC
3' ss Score
5.35
5' ss Seq
CAGGTACTG
5' ss Score
9.04
Exon sequences
Seq C1 exon
GCCGGACTGCATCCGCCGCGGCGTCTCCATGGCACGGCCCTGGCCTCCGACTTCAACGACTTCATAAGGCGGCGTTTCTGGGCGCAGCCGTGTCGCTCCTG
Seq A exon
GACAGTTGCTGTGCGACTTGGACAGTAGAGGAGCGTCTCCCAAGTTTTCATCCAACAGCCACCCCTAAAGCTTCCACCCTCCTCCCCTGAGAGGACGTTTGATGCCGGGCCCCTGAGATTCTCGTTGACAAGCCCCTCTGGGTCCCCCTGAGCCAGAATCTGCTGACCCATTTGCCCACCTTTGGGCTTCGATGCCTAACCATGTCTGCCTCATCCTCAGGCGGCTCCCCCAG
Seq C2 exon
GTTTCCATCGTGTGGAAAGAACGGAGTAACGAGTCTCACGCAGAAAAAGGTCTTGAGGACACCTTGCGGCGCACCCAGTGTTACCGTGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000030567-'1-3,'1-0,5-3
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.848 C2=0.602
Domain overlap (PFAM):
C1:
NA
A:
PF106014=zf-LITAF-like=PU(2.0=9.1)
C2:
PF106014=zf-LITAF-like=FE(61.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCTGGCCTCCGACTTC
R:
CGTCACGGTAACACTGGGTG
Band lengths:
156-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development