RnoEX0062090 @ rn6
Exon Skipping
Gene
ENSRNOG00000014584 | Odf2
Description
outer dense fiber of sperm tails 2 [Source:RGD Symbol;Acc:3229]
Coordinates
chr3:8447871-8452848:+
Coord C1 exon
chr3:8447871-8449804
Coord A exon
chr3:8451291-8451527
Coord C2 exon
chr3:8452758-8452848
Length
237 bp
Sequences
Splice sites
3' ss Seq
CCTCCCTCCCACTTTGGCAGGAC
3' ss Score
8.27
5' ss Seq
CAGGTACAG
5' ss Score
8.68
Exon sequences
Seq C1 exon
CAGGATGGTAGGGATAGTTAGGACCGAGGGATCCAGACTGGATTTCAACTCAAGGCCATCTTCCTGCTTCATTGTTGAGATTACTGGCATGGAAAAAAAAAAGGCTCAGTTTGGTGGTGCACTCCTATAATCCCAGGGCTCAGGAAGAGAGGCAGATTTCTGCTCAAGCACAGCAGGTTCTACACCAGCCAGGGTTGCACGCACCAAATGAGCCGTCAAGGATTGACGAACAAATATGACATGGTAAGACTGCCCTGCCCGGTGTGAAGGTGGGAAGGTAGTTAAGGTTCAGGCTCCAGGGAGGACCTGGTGGGAGCATGACTGACTACTGTGTTGGAGTTAAGGTGTCAAGGAAAAGAGGTCTACCCAGCCCTGAGGTTGTTAAAAGTCTCAGAATCCAAGGCGGGAACGTGAGCCTCGTGACAGTCCCCCACGATCCGCTAACAGGGAAGCATAGTTGAGAAGATGGCGGCTCAGCAGAGAGAACCTCAGCAGAGTAG
Seq A exon
GACAGTTGCTGTGCGACTTGGACAGTAGAGGAGCGCCTCCCAAGTTTTCATCCAACTGCCACCCCCAAAGCTTCCACCCTCCTCCCCTCAGAGAGAGGACGTTTGATGCCCGGCCCCTGAGATTCTCATTGGCAAGCCCCTCTGGGTCCCCCTGAGCAGAGCCTGCCGACCCAATTGCCCAACTTTGCGGCTTTGATGCTTAGCCATGTCTGCCTCATCCTCAGGCGGCTCCCCCAG
Seq C2 exon
GTTTCCATCGTGTGGGAAGAACGGAGTAACGAGTCTCACACAGAAAAAAGTCTTGAGAACACCTTGTGGCGCACCCAGTGTAACTGTGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014584_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. ATG)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.896 C2=0.560
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF106014=zf-LITAF-like=FE(60.0=100)
Main Skipping Isoform:
ENSRNOT00000020073fB10050
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACATGGTAAGACTGCCCTGC
R:
TTACTCCGTTCTTCCCACACG
Band lengths:
292-529
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]