RnoALTD0020893-1/4 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000014584 | Odf2
Description
outer dense fiber of sperm tails 2 [Source:RGD Symbol;Acc:3229]
Coordinates
chr3:8450612-8451527:+
Coord C1 exon
chr3:8450612-8450737
Coord A exon
NA
Coord C2 exon
chr3:8451291-8451527
Length
0 bp
Sequences
Splice sites
5' ss Seq
CTGGTGGGT
5' ss Score
6.29
3' ss Seq
CCTCCCTCCCACTTTGGCAGGAC
3' ss Score
8.27
Exon sequences
Seq C1 exon
CGCTAACGGGCGGGCCGGCCGCCTCCGTCCTCTCCGGGCCATCGGCAGCGCTCTTTCCCTCCTCTGCTGCCCTCGGGCAGGGCTGCGCCCTTCTATGGGCAGAACCCCGTTCCCTCTTGCCCGCTG
Seq A exon
NA
Seq C2 exon
GACAGTTGCTGTGCGACTTGGACAGTAGAGGAGCGCCTCCCAAGTTTTCATCCAACTGCCACCCCCAAAGCTTCCACCCTCCTCCCCTCAGAGAGAGGACGTTTGATGCCCGGCCCCTGAGATTCTCATTGGCAAGCCCCTCTGGGTCCCCCTGAGCAGAGCCTGCCGACCCAATTGCCCAACTTTGCGGCTTTGATGCTTAGCCATGTCTGCCTCATCCTCAGGCGGCTCCCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014584-2-1,3-1,4-1,5-1-1/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.896
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAACCCCGTTCCCTCTTG
R:
GGGGCTTGCCAATGAGAATCT
Band lengths:
167-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]