MmuALTD1013217-1/4 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000026790 | Odf2
Description
outer dense fiber of sperm tails 2 [Source:MGI Symbol;Acc:MGI:1098824]
Coordinates
chr2:29890156-29891002:+
Coord C1 exon
chr2:29890156-29890211
Coord A exon
NA
Coord C2 exon
chr2:29890766-29891002
Length
0 bp
Sequences
Splice sites
5' ss Seq
CTGGTGGGT
5' ss Score
6.29
3' ss Seq
CTCCCTCCCCACTTTGGCAGGAC
3' ss Score
8.01
Exon sequences
Seq C1 exon
CCTCGGGCAGGGCTGCGCCCTTCTATGGGCAGAACCCCGTCCCCTCTTGCCCGCTG
Seq A exon
NA
Seq C2 exon
GACAGTTGCTGTGCGACTTGGACAGTAGAGGAGCGCCTCCCAAGTTTTCATCCAACTGCCACCCCCAAAGCTTCCACCCTCCTCCCCTCAGAGAGAGGACGTTTGATGCCCGGCCCCTGAGATTCTCATTGGCCAGCCCCTCTGGGTCCCCCTGAGCAGAGCCTGCCGACCCAATTGCCCATCTTTGCGGCTTTGATGCTTAACCATGTCTGCCTCATCCTCAGGCGGCTCCCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026790-2-16,3-16,4-16,5-16-1/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.881
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAACCCCGTCCCCTCTT
R:
GGGGTGGCAGTTGGATGAAAA
Band lengths:
92-96
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types