HsaALTD1021643-1/2 @ hg38
Alternative 5'ss
Gene
ENSG00000136811 | ODF2
Description
outer dense fiber of sperm tails 2 [Source:HGNC Symbol;Acc:HGNC:8114]
Coordinates
chr9:128456466-128457437:+
Coord C1 exon
chr9:128456466-128456576
Coord A exon
NA
Coord C2 exon
chr9:128457198-128457437
Length
0 bp
Sequences
Splice sites
5' ss Seq
CTGGTGGGT
5' ss Score
6.29
3' ss Seq
ATTTCCCCCTACTTTGGCAGGAC
3' ss Score
7.57
Exon sequences
Seq C1 exon
CCGCCTCCTTCCTCTCTTGGCTACCACGGGGCTCTGCCCCTCCTCTGCCGCCCGCGGGCAGGGCTTCACCTTTCTCTCTATGGGCAGAAACCGGTACCCTCCTGCCTGCTG
Seq A exon
NA
Seq C2 exon
GACAGTTGCTGTGCGACTTGGACAGTAGAGGAGCGCCTCCCAAGTTTTCATCCAACTGCCAACCCCAAAGCTTCCACCCTTCTCCCCTCAGAGAGGACGTTTGATGCCGGGCCCCTTGAGAGGCTCATTGACAAGCCTGCCCCTCTGGGTCCCCCTGAGCAGAGCCTGCTGACCCAATTGCCCACCTTTGCGGCTTTGATGCCTAGCCATGTCTGCCTCATCCTCAGGCGGCTCCCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136811-3-14,4-14-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.843
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGGGCTTCACCTTTCTCTC
R:
AAAGGTGGGCAATTGGGTCAG
Band lengths:
243-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains