RnoEX0062075 @ rn6
Exon Skipping
Gene
ENSRNOG00000014584 | Odf2
Description
outer dense fiber of sperm tails 2 [Source:RGD Symbol;Acc:3229]
Coordinates
chr3:8450275-8451527:+
Coord C1 exon
chr3:8450275-8450442
Coord A exon
chr3:8450612-8450737
Coord C2 exon
chr3:8451291-8451527
Length
126 bp
Sequences
Splice sites
3' ss Seq
GCGCGGGCCCTTCCTCCTCCCGC
3' ss Score
-10.31
5' ss Seq
CTGGTGGGT
5' ss Score
6.29
Exon sequences
Seq C1 exon
GCCAATGGGCGAGCTGCCGACCGGTTGTCGGAAAAGGAGGCGGAAGCGGGGAGGAGCCGCCGCGGGAGCCGGACTGCATCCGCCGCGGCGTCTCCATGGCACGACCCTGGCCTCCGACTTCAACGACTTCATAAGGAGACGGTTCTGGGCGCAGCCGTGCCGCTCTTG
Seq A exon
CGCTAACGGGCGGGCCGGCCGCCTCCGTCCTCTCCGGGCCATCGGCAGCGCTCTTTCCCTCCTCTGCTGCCCTCGGGCAGGGCTGCGCCCTTCTATGGGCAGAACCCCGTTCCCTCTTGCCCGCTG
Seq C2 exon
GACAGTTGCTGTGCGACTTGGACAGTAGAGGAGCGCCTCCCAAGTTTTCATCCAACTGCCACCCCCAAAGCTTCCACCCTCCTCCCCTCAGAGAGAGGACGTTTGATGCCCGGCCCCTGAGATTCTCATTGGCAAGCCCCTCTGGGTCCCCCTGAGCAGAGCCTGCCGACCCAATTGCCCAACTTTGCGGCTTTGATGCTTAGCCATGTCTGCCTCATCCTCAGGCGGCTCCCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014584-'1-1,'1-0,2-1
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.576 A=0.000 C2=0.896
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
ENSRNOT00000020073fB10050
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTCCGACTTCAACGACTTC
R:
CATCAAAGCCGCAAAGTTGGG
Band lengths:
257-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]