HsaEX0044592 @ hg19
Exon Skipping
Gene
ENSG00000136811 | ODF2
Description
outer dense fiber of sperm tails 2 [Source:HGNC Symbol;Acc:8114]
Coordinates
chr9:131218336-131221936:+
Coord C1 exon
chr9:131218336-131218534
Coord A exon
chr9:131219477-131219716
Coord C2 exon
chr9:131221846-131221936
Length
240 bp
Sequences
Splice sites
3' ss Seq
ATTTCCCCCTACTTTGGCAGGAC
3' ss Score
7.57
5' ss Seq
CAGGTATTG
5' ss Score
8.35
Exon sequences
Seq C1 exon
ACCCAAGCGGCTCCCGGGGGGGTTTGAACTGGCCAATGGGCGAGCTGCCGACCGGGTGTCGGAAAAGGAGGCGGAAGCGGGGAGGAGCCGCTGCCAGAGCCAGACTGCATCCGCCGCGGCGTCTCCATGGCACGACCCTGGCCTCCGACTTCAACGACTTCATAAGGCGGCGTTTCTGGGCGCAGCCGTGTCGCTCCTG
Seq A exon
GACAGTTGCTGTGCGACTTGGACAGTAGAGGAGCGCCTCCCAAGTTTTCATCCAACTGCCAACCCCAAAGCTTCCACCCTTCTCCCCTCAGAGAGGACGTTTGATGCCGGGCCCCTTGAGAGGCTCATTGACAAGCCTGCCCCTCTGGGTCCCCCTGAGCAGAGCCTGCTGACCCAATTGCCCACCTTTGCGGCTTTGATGCCTAGCCATGTCTGCCTCATCCTCAGGCGGCTCCCCCAG
Seq C2 exon
GTTTCCATCGTGTGGGAAGAACGGAGTAACGAGTCTCACGCAGAAAAAGGTCTTGAGAGCACCTTGTGGCGCACCCAGTGTAACTGTGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136811-'0-7,'0-5,3-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
Show structural model
Features
Disorder rate (Iupred):
C1=0.582 A=0.843 C2=0.674
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGGTTTGAACTGGCCAATG
R:
CAGTTACACTGGGTGCGCC
Band lengths:
268-508
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)