MmuEX0032955 @ mm10
Exon Skipping
Gene
ENSMUSG00000026790 | Odf2
Description
outer dense fiber of sperm tails 2 [Source:MGI Symbol;Acc:MGI:1098824]
Coordinates
chr2:29889221-29892276:+
Coord C1 exon
chr2:29889221-29889278
Coord A exon
chr2:29890766-29891002
Coord C2 exon
chr2:29892186-29892276
Length
237 bp
Sequences
Splice sites
3' ss Seq
CTCCCTCCCCACTTTGGCAGGAC
3' ss Score
8.01
5' ss Seq
CAGGTACAG
5' ss Score
8.68
Exon sequences
Seq C1 exon
AACAGGGAAGCATAGTTGAGAAGATGGCGGCTCAGCAGAGAGAACCTCAGCAGAGCAG
Seq A exon
GACAGTTGCTGTGCGACTTGGACAGTAGAGGAGCGCCTCCCAAGTTTTCATCCAACTGCCACCCCCAAAGCTTCCACCCTCCTCCCCTCAGAGAGAGGACGTTTGATGCCCGGCCCCTGAGATTCTCATTGGCCAGCCCCTCTGGGTCCCCCTGAGCAGAGCCTGCCGACCCAATTGCCCATCTTTGCGGCTTTGATGCTTAACCATGTCTGCCTCATCCTCAGGCGGCTCCCCCAG
Seq C2 exon
GTTTCCATCGTGTGGGAAGAACGGAGTAACGAGTCTCACACAGAAAAAAGTCTTGAGAACACCTTGTGGCGCACCCAGTGTAACTGTTACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026790_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.881 C2=0.645
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAAGCATAGTTGAGAAGATGGC
R:
CAGTTACACTGGGTGCGCC
Band lengths:
140-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types