MmuEX0020393 @ mm9
Exon Skipping
Gene
ENSMUSG00000035778 | Ggta1
Description
glycoprotein galactosyltransferase alpha 1, 3 [Source:MGI Symbol;Acc:MGI:95704]
Coordinates
chr2:35268846-35277788:-
Coord C1 exon
chr2:35277700-35277788
Coord A exon
chr2:35271992-35272027
Coord C2 exon
chr2:35268846-35268947
Length
36 bp
Sequences
Splice sites
3' ss Seq
TATTTCTTATTTGTCCTTAGCCC
3' ss Score
8.04
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
GAGAAAATAATGAATGTCAAGGGAAAAGTAATCCTGTTGATGCTGATTGTCTCAACCGTGGTTGTCGTGTTTTGGGAATATGTCAACAG
Seq A exon
CCCAGAAGGCTCTTTCTTGTGGATATATCACACAAA
Seq C2 exon
GACCCACAGTTATCAAGAAGACAACGTAGAAGGACGGAGAGAAAAGGGTAGAAATGGAGATCGCATTGAAGAGCCTCAGCTATGGGACTGGTTCAATCCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035778_MULTIEX1-3/4=2-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.349
Domain overlap (PFAM):
C1:
PF034148=Glyco_transf_6=PU(25.9=93.3)
A:
PF034148=Glyco_transf_6=PU(0.1=0.0)
C2:
PF034148=Glyco_transf_6=FE(10.3=100)
Other Inclusion Isoforms:
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGATTGTCTCAACCGTGGT
R:
GCTGAGGCTCTTCAATGCGAT
Band lengths:
128-164
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: