MmuEX0020393 @ mm10
Exon Skipping
Gene
ENSMUSG00000035778 | Ggta1
Description
glycoprotein galactosyltransferase alpha 1, 3 [Source:MGI Symbol;Acc:MGI:95704]
Coordinates
chr2:35413326-35422268:-
Coord C1 exon
chr2:35422180-35422268
Coord A exon
chr2:35416472-35416507
Coord C2 exon
chr2:35413326-35413427
Length
36 bp
Sequences
Splice sites
3' ss Seq
TATTTCTTATTTGTCCTTAGCCC
3' ss Score
8.04
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
GAGAAAATAATGAATGTCAAGGGAAAAGTAATCCTGTTGATGCTGATTGTCTCAACCGTGGTTGTCGTGTTTTGGGAATATGTCAACAG
Seq A exon
CCCAGAAGGCTCTTTCTTGTGGATATATCACACAAA
Seq C2 exon
GACCCACAGTTATCAAGAAGACAACGTAGAAGGACGGAGAGAAAAGGGTAGAAATGGAGATCGCATTGAAGAGCCTCAGCTATGGGACTGGTTCAATCCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035778_MULTIEX1-7/8=6-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.340
Domain overlap (PFAM):
C1:
PF034148=Glyco_transf_6=PU(25.9=93.3)
A:
PF034148=Glyco_transf_6=PU(0.1=0.0)
C2:
PF034148=Glyco_transf_6=FE(10.3=100)
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGATTGTCTCAACCGTGGT
R:
GCTGAGGCTCTTCAATGCGAT
Band lengths:
128-164
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types