RnoEX0038376 @ rn6
Exon Skipping
Gene
ENSRNOG00000019179 | Ggta1
Description
glycoprotein, alpha-galactosyltransferase 1 [Source:RGD Symbol;Acc:629476]
Coordinates
chr3:14637115-14643904:-
Coord C1 exon
chr3:14643818-14643904
Coord A exon
chr3:14640153-14640188
Coord C2 exon
chr3:14637115-14637216
Length
36 bp
Sequences
Splice sites
3' ss Seq
TGTTTCTTATTTGCCTGTAGTCC
3' ss Score
7.88
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
GAAAATAATGAATGTCAAGGGGAAAATAATCCTGTCGGTGCTGATGGTCTCAACCGTGCTTGTCGTGTTTTGGGAATATGTCAACAG
Seq A exon
TCCAGAAGGCTCTTTCTTGTGGATATATTACACAAA
Seq C2 exon
GACCCACAGTTATCAAGAAGAGGACATAGAGAGAGCGAGAGAAAAGGGGAGAAATGGAGACAGCATTGTAGAGCCTCAGCTCTGGGACTGGTTCAATCCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019179_MULTIEX1-3/6=2-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.181
Domain overlap (PFAM):
C1:
PF034148=Glyco_transf_6=PU(7.5=92.6)
A:
PF034148=Glyco_transf_6=PU(0.1=0.0)
C2:
PF034148=Glyco_transf_6=FE(10.2=100)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCGGTGCTGATGGTCTCAAC
R:
TGCTGTCTCCATTTCTCCCCT
Band lengths:
119-155
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]