BtaEX0015643 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012090 | GGTA1
Description
Bos taurus alpha-galactosyltransferase 1 (glycoprotein) (GGTA1), mRNA. [Source:RefSeq mRNA;Acc:NM_177511]
Coordinates
chr11:92311348-92319668:-
Coord C1 exon
chr11:92319580-92319668
Coord A exon
chr11:92313046-92313081
Coord C2 exon
chr11:92311348-92311413
Length
36 bp
Sequences
Splice sites
3' ss Seq
TATGTCTCATTTGCTTTTAGCCC
3' ss Score
7.98
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
GAGAAAATAATGAATGTCAAAGGAAAAGTGATTCTGTCAATGCTGGTTGTCTCAACTGTCATTGTTGTGTTTTGGGAATATATCCACAG
Seq A exon
CCCAGAAGGCTCTTTGTTCTGGATAAACCCATCAAG
Seq C2 exon
AAACCCAGAAGTTGGTGGCAGCAGCATTCAGAAGGGCTGGTGGCTTCCGAGATGGTTTAACAATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012090_MULTIEX1-6/9=4-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF034148=Glyco_transf_6=PU(0.1=0.0)
C2:
PF034148=Glyco_transf_6=PU(6.7=95.7)
Main Skipping Isoform:
ENSBTAT00000016033fB2986
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGTCAATGCTGGTTGTCTCA
R:
TAAACCATCTCGGAAGCCACC
Band lengths:
116-152
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development