MmuEX0020391 @ mm10
Exon Skipping
Gene
ENSMUSG00000035778 | Ggta1
Description
glycoprotein galactosyltransferase alpha 1, 3 [Source:MGI Symbol;Acc:MGI:95704]
Coordinates
chr2:35413326-35432632:-
Coord C1 exon
chr2:35432514-35432632
Coord A exon
chr2:35423232-35423412
Coord C2 exon
chr2:35413326-35413427
Length
181 bp
Sequences
Splice sites
3' ss Seq
TAAAACTTGCTTTGTTCCAGGCT
3' ss Score
7.61
5' ss Seq
CAGGTGTGC
5' ss Score
6.46
Exon sequences
Seq C1 exon
GAGTTGGAACCCTGTACCTTCCTTTCCTCTGCTGAGCCCTGCCTCCTTAGGCAGGCCAGAGCTCGACAGAACTCGGTTGCTTTGCTGTTTGCTTTGGAGGGAACACAGCTGACGATGAG
Seq A exon
GCTGACTTTGAACTCAAGAGATCTGCTTACCCCAGTCTCCTGGAATTAAAGGCCTGTACTACATTTGCCTGGACCTAAGATTTTCATGATCACTATGCTTCAAGATCTCCATGTCAACAAGATCTCCATGTCAAGATCCAAGTCAGAAACAAGTCTTCCATCCTCAAGATCTGGATCACAG
Seq C2 exon
GACCCACAGTTATCAAGAAGACAACGTAGAAGGACGGAGAGAAAAGGGTAGAAATGGAGATCGCATTGAAGAGCCTCAGCTATGGGACTGGTTCAATCCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035778_MULTIEX1-5/8=3-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.357 C2=0.340
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF034148=Glyco_transf_6=FE(10.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTGGAACCCTGTACCTTCCT
R:
TGGATTGAACCAGTCCCATAGC
Band lengths:
218-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types