RnoEX0038374 @ rn6
Exon Skipping
Gene
ENSRNOG00000019179 | Ggta1
Description
glycoprotein, alpha-galactosyltransferase 1 [Source:RGD Symbol;Acc:629476]
Coordinates
chr3:14643818-14660166:-
Coord C1 exon
chr3:14660051-14660166
Coord A exon
chr3:14644859-14645035
Coord C2 exon
chr3:14643818-14643906
Length
177 bp
Sequences
Splice sites
3' ss Seq
TAAAACTTGCTCTGTTCCAGGTT
3' ss Score
9.27
5' ss Seq
CAGGTGTGC
5' ss Score
6.46
Exon sequences
Seq C1 exon
GAGTTGGAGCCCTGTACCTTCCTTTCCTCTGAGCCCTGTCTCCTTCGGCAGGCGGGAGCTCCATAGAACTCGGTTGCTCTGCTGTTTGCTTTGGAGAGGACACAGCGGACAATGAG
Seq A exon
GTTGACTATGAACTCAAGAGATATACTTACCCCAGTCTCCTGGAATTAAAGGCCTGTACCGCCTTGCCTGGACCTAAGATTATCATGGTTACTATGCCTCAAGATCTCCACGTCAAGGTCTCCATGTCAAGATCCAAGTCAGAAACAAGTCTTCTATCCTCAAGATCTGGATCACAG
Seq C2 exon
GAGAAAATAATGAATGTCAAGGGGAAAATAATCCTGTCGGTGCTGATGGTCTCAACCGTGCTTGTCGTGTTTTGGGAATATGTCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019179_MULTIEX1-1/6=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.129 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF034148=Glyco_transf_6=PU(7.5=92.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGGAGCCCTGTACCTTCCT
R:
TGTTGACATATTCCCAAAACACGAC
Band lengths:
202-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]