MmuEX0011046 @ mm9
Exon Skipping
Gene
ENSMUSG00000039787 | Cercam
Description
cerebral endothelial cell adhesion molecule [Source:MGI Symbol;Acc:MGI:2139134]
Coordinates
chr2:29726795-29728532:+
Coord C1 exon
chr2:29726795-29726912
Coord A exon
chr2:29728083-29728217
Coord C2 exon
chr2:29728328-29728532
Length
135 bp
Sequences
Splice sites
3' ss Seq
GACACTGTCCTTCTCCAAAGTTC
3' ss Score
7.53
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
GTCCTACCCAGATGAACAGGGTCCCAAGCACTGGACCAAAGAACGGCATCAGTTTTTGATGGAGCTGAGGCAGGAAGCACTGGCCTTTGCCAGGGACTGGGGAGCTGACTACATCCTG
Seq A exon
TTCGCAGATACAGACAACATTCTTACTAACAACCAGACACTGAAGCTTCTCATAGATCGGCAGCTGCCGGTGGTGGCCCCGATGCTGGACTCTCAGACCTATTATTCCAACTTTTGGTGTGGGATCACTCCACAG
Seq C2 exon
GGCTACTATCGCCGCACGGCTGAATACTTCCCTACTAAGAACCGCCAGCGCCAGGGCTGCTTCCGGGTCCCTATGGTCCACTCTACCTTCCTGCTGTCCTTGCAGACTGAGGAAACAGCCCGGCTTGCCTTCTACCCTCCTCATCCCAACTACAGTTGGCCTTTTGATGACATCATTGTCTTTGCCTATGCCTGCCAGGCTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039787-'6-8,'6-7,8-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.327 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF137041=Glyco_tranf_2_4=FE(32.2=100)
A:
PF137041=Glyco_tranf_2_4=PD(14.0=37.8)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGATGAACAGGGTCCCAAGC
R:
GGATGAGGAGGGTAGAAGGCA
Band lengths:
256-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: