GgaEX7009744 @ galGal4
Exon Skipping
Gene
ENSGALG00000004986 | CERCAM
Description
cerebral endothelial cell adhesion molecule [Source:HGNC Symbol;Acc:HGNC:23723]
Coordinates
chr17:4936283-4936899:-
Coord C1 exon
chr17:4936782-4936899
Coord A exon
chr17:4936564-4936698
Coord C2 exon
chr17:4936283-4936487
Length
135 bp
Sequences
Splice sites
3' ss Seq
CACCAGCTCTGTCCCCGCAGTTT
3' ss Score
7.91
5' ss Seq
CAGGTACAG
5' ss Score
8.68
Exon sequences
Seq C1 exon
TTCTTACCCCGACGAGCTCGGCCCCAAGCACTGGAGCGACAAACGCTATGAAAACCTGATGAGGCTGAAGCAGGAGGCTCTGAGCTACGCCCGGGGGCTGCGGGCGGATTACATCCTG
Seq A exon
TTTGTGGACACGGACAGCATCCTGACCAACAACCAGACCCTCACCTTCCTCATGGCGCAGAACAAGTCGGTGGTGGCCCCAATGCTGGACTCGCAGACCTTTTACTCCAACTTCTGGTGCGGGATAACACCCCAG
Seq C2 exon
GGCTTCTACCGCCGCACGGCCGACTACTTCCCCACCAAGAATAGGCAGCGCCGGGGCTGCTTCGCCGTGCCCATGGTGTACGCCACGTTCCTGATCGACCTGCGGAAGGAGGAGACGGCACAGCTGGCCTTCTACCCACCCCACCCCAACTACACCTGGGCTTTTGACGACATCATTGTCTTTGCCTACTCCTGCCAGGAGGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004986-'7-8,'7-5,9-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.050 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF137041=Glyco_tranf_2_4=FE(33.1=100)
A:
PF137041=Glyco_tranf_2_4=PD(14.4=37.8)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAACCTGATGAGGCTGAAGCA
R:
TGATGTCGTCAAAAGCCCAGG
Band lengths:
242-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]