RnoEX0020280 @ rn6
Exon Skipping
Gene
ENSRNOG00000026604 | Cercam
Description
cerebral endothelial cell adhesion molecule [Source:RGD Symbol;Acc:1304778]
Coordinates
chr3:8434226-8435914:+
Coord C1 exon
chr3:8434226-8434343
Coord A exon
chr3:8435459-8435593
Coord C2 exon
chr3:8435710-8435914
Length
135 bp
Sequences
Splice sites
3' ss Seq
GACATTGTCCTTCTCCAAAGTTC
3' ss Score
6.96
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
GTCCTATCCAGATGAGCAGGGGCCCAAGCACTGGACCAGAGAAAGGCATCAGTTTTTGATGGAGCTGAAACAGGAAGCACTGGCTTTTGCCAGGGACTGGGGGGCTGACTACATCCTG
Seq A exon
TTCGCAGACACAGACAACATTCTTACCAATAACCAAACACTGAGGCTTCTCATAGATCGGCAATTGCCAGTGGTGGCCCCAATGCTGGACTCCCAGACCTATTATTCCAACTTTTGGTGTGGGATCACTCCACAG
Seq C2 exon
GGCTACTATCGCCGTACAGCTGAATACTTCCCTACTAAGAACCGCCAGCGCCAGGGCTGCTTCCGGGTTCCAATGGTCCACTCCACCTTCCTGGTATCCTTGCAGACGGAGGAAACAGCCCGACTTGCCTTCTACCCACCTCATCCCAACTATACTTGGCCTTTTGATGACATCATTGTCTTCGCCTATGCCTGCCAGGCTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026604-'8-8,'8-6,10-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.175 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF137041=Glyco_tranf_2_4=FE(48.1=100)
A:
PF137041=Glyco_tranf_2_4=PD(21.0=37.8)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTGAAACAGGAAGCACTGG
R:
GCAGGCATAGGCGAAGACAAT
Band lengths:
251-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]