RnoINT0034831 @ rn6
Intron Retention
Gene
ENSRNOG00000026604 | Cercam
Description
cerebral endothelial cell adhesion molecule [Source:RGD Symbol;Acc:1304778]
Coordinates
chr3:8434226-8435593:+
Coord C1 exon
chr3:8434226-8434343
Coord A exon
chr3:8434344-8435458
Coord C2 exon
chr3:8435459-8435593
Length
1115 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGG
5' ss Score
9.68
3' ss Seq
GACATTGTCCTTCTCCAAAGTTC
3' ss Score
6.96
Exon sequences
Seq C1 exon
GTCCTATCCAGATGAGCAGGGGCCCAAGCACTGGACCAGAGAAAGGCATCAGTTTTTGATGGAGCTGAAACAGGAAGCACTGGCTTTTGCCAGGGACTGGGGGGCTGACTACATCCTG
Seq A exon
GTAAGGAAGCCTGGCTGGGGATGAGGCGGGAGGCATTAGTAAAGTCTGCTTACACCCAAACCATCCACAGGCTGGGTCTTTTGGAGACTGAGCTGAGACCCCTGTATTTAAGCTCATACTAGAGACTAAGGCTGGCTCCTTGACAGGTCCTAGGTTATGTGCCATGCCTAGATTCCTGAGCTTTTGTATACCTAGAGTATAAACCGAGCCTGGATCCCTGGAGTAGAGCTCAGATTAGATTTTTTTCAATATTTATTTTTGTTTTGTTTGCTCATTGGGTTTTTCAAGACAGGGTTTCTCTGTGTAATCCCGGCCGTCCCAGAACTCACTCTGTAGAACAGGCTGGCCTCAGAGCTCCATCTGTCTCCGCCTCCCAAGTGCCAGAATAAAAAGCATGGTCCGCAACCACCTGGTTTAGTCTTGTTTTTGTTATTTTTGAAGGTGGGTGTTGGGCCTGCATGTATGTCTGTGTATCGTGTGCATGAAGCCCACAGAGGGCAGAAGAGGGCCTATGAGCTCCACATAGTCTATGGGTTTCCACCCAGGTCCTCTGCAAGAGCCACCAGTCCTTTTAGTCAGACCCCTCAGATACTACTTTGGAGTTACTGTCTCAGCTAGATCTCAGATAAGCTACTTAGATCTGCTACTTGCTCTACTCAGAATTCTTTTTTTTTTCTTTTTTCTTTTTTTTTTTGGAGCTGGGGACTGAACCCAGGGCCTTCTACTCAGAATTCTAAGCCAGCGTCTCAGAATGGCCCCTTGTCAGAAATGGTTAGCCCCCCCCCTTTATCTGTATCCTGTATATATGTATATATGCATGCATGCATGTATGTATATATGTATGCATGTCTGTATGTATATGTGCACATGCTACAATATATGTGTGCATGTCAGAGGACGGCTTTCCAGAGTTGGTTTCTTCTGTGTGGATCCCAGAGACTGAATTCAGGTAGTCAGGCTTGGCAGCAAGTGCCTTACCTTTCTAGCCACCTCTGTCTGGCCCCGGTTAGATCTCTCTGTAGATACCCAGAGCCACCCAGAAGGAATTCCCACTCATGAACTCTTTGGTCCTGAGTCTCAAACAGGATTCCCTGTGACATTGTCCTTCTCCAAAG
Seq C2 exon
TTCGCAGACACAGACAACATTCTTACCAATAACCAAACACTGAGGCTTCTCATAGATCGGCAATTGCCAGTGGTGGCCCCAATGCTGGACTCCCAGACCTATTATTCCAACTTTTGGTGTGGGATCACTCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026604:ENSRNOT00000060969:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.175 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF137041=Glyco_tranf_2_4=FE(48.1=100)
A:
NA
C2:
PF137041=Glyco_tranf_2_4=PD(21.0=37.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTATCCAGATGAGCAGGGG
R:
GAGTGATCCCACACCAAAAGT
Band lengths:
247-1362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]