HsaINT0033958 @ hg38
Intron Retention
Gene
ENSG00000167123 | CERCAM
Description
cerebral endothelial cell adhesion molecule [Source:HGNC Symbol;Acc:HGNC:23723]
Coordinates
chr9:128423146-128424272:+
Coord C1 exon
chr9:128423146-128423263
Coord A exon
chr9:128423264-128424137
Coord C2 exon
chr9:128424138-128424272
Length
874 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGG
5' ss Score
8.3
3' ss Seq
GTGACGTCCCCTCCTCAAAGTTT
3' ss Score
6.27
Exon sequences
Seq C1 exon
GTTCTACCCAGATGAAGAGGGTCCCAAGCACTGGACCAAAGAAAGGCACCAGTTTCTGATGGAGCTGAAGCAGGAAGCCCTCACCTTTGCCAGGAACTGGGGGGCCGACTATATCCTG
Seq A exon
GTGAGGAAGTCTGGCTAGAATCGGGCTTCTGAAAGGCGGTAGTATCCGTCCCTGATAGAAATCTGGGTATAGGCTGGGTGCAGTGGCTCACGCCTATAATCCTAGCACTTTGGGAGGCCAAGGCAGGTGGATCACCTGAGGTCAGAAGTTCGAGACCAGCCTGGCCAACATGGTGATACCCCATCTCTACTAAAAATACAATAATTAGCTGGGCGTGGTCGCAGGCGCCTGTAATTCCAGCTGCTTGGGAGGCTGAGGCATGAGAATGGCATGAACCTGGGAGGTAGAGGTTGCACTGAGCTGAAATCATGCCACTGCATTCCAGCCTGGGTGACAAGAGTGAAACTCAGTCTCAAAAAAAAAAAAAAAAGAAAAAGAAATCTGAATGTGACTGACCCACCCGAAGGCTGGATCCTTCGGCAGGCTATCTGGGCCAGAGCCCAGACCAGATGTTCAGATTGGATCCCTATGTTAAAAGCTCAGACTAGGTACTAAGCCTGGACCCCTCAGATAGATCCCGTTGTATACACTTTACTGAGCCTCGATTTCTGGGCTAGAGCCCAGGGTATAAATTGAGCCTGGATCTCTGAACTAGAGCTCAGAGTAGGTGTTTGGATCCATTTTCTAAGCCAGATCCCAGATAAAGGTCTTAGATCAGTAACTCAGGTATAATCTCTGGACCCAGTCCCTGAGTCAGTGCCCCAGACTAGAGCCTTGGTCCAGAAACAGATGTACTGAGTTTGTGAGACCTCTGTAAGAGCATTCCCACTGGATCCTAGGAGCCACGCTGGGTCTCTGGCAGGACCACTCAGTGAACTCCTTGGGGGGCTGCAGCCCAGGCAGGGCTGGAGCCTGTGACGTCCCCTCCTCAAAG
Seq C2 exon
TTTGCAGACACAGACAACATTCTGACCAACAATCAGACTCTGCGGCTTCTCATGGGGCAGGGGCTTCCAGTGGTGGCCCCAATGCTGGACTCCCAGACCTACTACTCCAACTTCTGGTGTGGGATCACCCCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167123:ENST00000420512:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.113 A=NA C2=0.002
Domain overlap (PFAM):
C1:
PF137041=Glyco_tranf_2_4=FE(32.2=100)
A:
NA
C2:
PF137041=Glyco_tranf_2_4=PD(14.0=37.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAGATGAAGAGGGTCCCAA
R:
GTGATCCCACACCAGAAGTTGG
Band lengths:
240-1114
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development