GgaINT1009209 @ galGal4
Intron Retention
Gene
ENSGALG00000004986 | CERCAM
Description
cerebral endothelial cell adhesion molecule [Source:HGNC Symbol;Acc:HGNC:23723]
Coordinates
chr17:4936564-4936899:-
Coord C1 exon
chr17:4936782-4936899
Coord A exon
chr17:4936699-4936781
Coord C2 exon
chr17:4936564-4936698
Length
83 bp
Sequences
Splice sites
5' ss Seq
CTGGTAGGG
5' ss Score
6.35
3' ss Seq
CACCAGCTCTGTCCCCGCAGTTT
3' ss Score
7.91
Exon sequences
Seq C1 exon
TTCTTACCCCGACGAGCTCGGCCCCAAGCACTGGAGCGACAAACGCTATGAAAACCTGATGAGGCTGAAGCAGGAGGCTCTGAGCTACGCCCGGGGGCTGCGGGCGGATTACATCCTG
Seq A exon
GTAGGGACGGGGCAGCGTGCTGGTGTCATGCCACGTGGGCTGCGGGTGTCCCCGTGCCTCCAGCACCAGCTCTGTCCCCGCAG
Seq C2 exon
TTTGTGGACACGGACAGCATCCTGACCAACAACCAGACCCTCACCTTCCTCATGGCGCAGAACAAGTCGGTGGTGGCCCCAATGCTGGACTCGCAGACCTTTTACTCCAACTTCTGGTGCGGGATAACACCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004986:ENSGALT00000007990:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.050 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF137041=Glyco_tranf_2_4=FE(33.1=100)
A:
NA
C2:
PF137041=Glyco_tranf_2_4=PD(14.4=37.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGATGAGGCTGAAGCAGGAG
R:
TAAAAGGTCTGCGAGTCCAGC
Band lengths:
167-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]