BtaEX6046413 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000038139 | CERCAM
Description
Bos taurus cerebral endothelial cell adhesion molecule (CERCAM), mRNA. [Source:RefSeq mRNA;Acc:NM_001102035]
Coordinates
chr11:99020187-99021470:+
Coord C1 exon
chr11:99020187-99020304
Coord A exon
chr11:99020994-99021128
Coord C2 exon
chr11:99021266-99021470
Length
135 bp
Sequences
Splice sites
3' ss Seq
TGACATCCGCCTCCCCACAGTTT
3' ss Score
9.49
5' ss Seq
CAGGTATGG
5' ss Score
9.99
Exon sequences
Seq C1 exon
GTCCTACCCAGATGAAGAGGGCCCTAAGCACTGGACCAAAGAAAGGCATCAGTTCCTGATGGAGCTGAAACAGGAGGCGCTGACCTTTGCCAGGGACTGGGGGGCAGACTATATCCTG
Seq A exon
TTTGCAGACACAGACAACATTCTGACCAACAACCAGACGCTGCGGCTTCTGATCGAGCCGGGGCTGCCCGTGGTGGCCCCGATGCTGGACTCTCAGACCTACTACTCCAATTTCTGGTGTGGAATCACCCCCCAG
Seq C2 exon
GGCTACTACCGCCGCACTGCCGACTACTTTCCCACCAAGAACCGCCAGCGCCGGGGCTGCTTCCGTGTCCCCATGGTCCACTCCACCTTCCTGGTATCCCTGCGGGCTGAGGGGACGGGCCAGCTGGCCTTCTACCCACCTCACCCCAACTATACCTGGCCCTTCGACGACATCATCGTCTTTGCCTACGCCTGTCAGGCTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038139-'2-4,'2-3,3-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.225 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF137041=Glyco_tranf_2_4=FE(41.5=100)
A:
PF137041=Glyco_tranf_2_4=PD(18.1=37.8)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCTAAGCACTGGACCAAAG
R:
TTGGGGTGAGGTGGGTAGAAG
Band lengths:
247-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]