DreEX0021034 @ danRer10
Exon Skipping
Gene
ENSDARG00000079049 | cercam
Description
cerebral endothelial cell adhesion molecule [Source:ZFIN;Acc:ZDB-GENE-030131-9787]
Coordinates
chr10:10396978-10402254:+
Coord C1 exon
chr10:10396978-10397095
Coord A exon
chr10:10399856-10399990
Coord C2 exon
chr10:10402050-10402254
Length
135 bp
Sequences
Splice sites
3' ss Seq
GTGTATATCCTTGTTTGCAGTAT
3' ss Score
6.77
5' ss Seq
CAGGTACGG
5' ss Score
10.88
Exon sequences
Seq C1 exon
GTCTTATGCAGGAGAATTGGGGCCAAAGCACTGGACAAACAGCCGCTATGAGTATATTATGAAGCTTAAACAGGCGGCATTAAACTTTGCCAAGAAACGCTGGGCTGACTATATTCTG
Seq A exon
TATTCAGACACAGACAACATCCTGACCAATCCTGACACGCTACACCTTCTTATGGCAGAGAATAAATCAGTCATTGCCCCAATGCTGGACTCACAGTCGGCTTACTCCAACTACTGGTGCGGCATCACTCCGCAG
Seq C2 exon
GGTTACTATCGGCGCACAGCAGAGTATTTTCCCACGAAGCAGCGTCAGCGTCTGGGCTGTTATCCTGTGCCGATGGTCCACTCCACTGTCCTGCTGGACCTGCGCAAACAGGGCACCCGGAAAGTGTCATTTCACCCCCCTCACAAAGACTACTCCTGGCCCTTTGACGACATCATCGTTTTCGCATTCTCCTGCAGAGTATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079049-'2-5,'2-4,4-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.050 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF137041=Glyco_tranf_2_4=FE(32.2=100)
A:
PF137041=Glyco_tranf_2_4=PD(14.0=37.8)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGGACAAACAGCCGCTATG
R:
AGGGCCAGGAGTAGTCTTTGT
Band lengths:
252-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]