MmuEX0018053 @ mm9
Exon Skipping
Gene
ENSMUSG00000026969 | Fam166a
Description
family with sequence similarity 166, member A [Source:MGI Symbol;Acc:MGI:3605773]
Coordinates
chr2:25076839-25077800:+
Coord C1 exon
chr2:25076839-25076933
Coord A exon
chr2:25077184-25077301
Coord C2 exon
chr2:25077603-25077800
Length
118 bp
Sequences
Splice sites
3' ss Seq
GCACATATTCTTTTCTCCAGTTC
3' ss Score
6.77
5' ss Seq
CATGTGAGT
5' ss Score
7.83
Exon sequences
Seq C1 exon
GTTATGCCGGCTTCGTCCCCCGGTTTGCCTGGGTAATGGGGATGAATTACCGTGATGGTGTCACACAAGCTATGGATGACTTTGACAAGAACCAG
Seq A exon
TTCGTGTTCAGACACCCAGTCTGTGCCCTGGGTGAAAGGCTGCCTAGGACCCACTGGCCAAACACCACCATCTATAGAAGCCAAGGCCTGATTCCTTTCTACATGGGCTTTATCCCAT
Seq C2 exon
CCATGCAGGACAACTATGCACTGACATTCGGTAACAGCACCCGAAGAGCCTATCAGAAGGAATTGGACAGGCGAAGCCACACACTATGAATTGCTTTAATGGTGGTATCTGTACAAGTGATGTCAGGACACAGGACAGCAAATGCACAGTGGACATGGCTAGCAGACAGGCTGTGAATGAATAAAGAGTTCACACTGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026969_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.103
Domain overlap (PFAM):
C1:
NO
A:
PF106294=DUF2475=PU(31.7=32.5)
C2:
PF106294=DUF2475=PD(65.9=90.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCTGGGTAATGGGGATGAA
R:
ATTCACAGCCTGTCTGCTAGC
Band lengths:
248-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: