BtaEX0013786 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004095 | FAM166A
Description
family with sequence similarity 166, member A [Source:HGNC Symbol;Acc:HGNC:33818]
Coordinates
chr11:105859143-105860113:+
Coord C1 exon
chr11:105859143-105859237
Coord A exon
chr11:105859521-105859638
Coord C2 exon
chr11:105860025-105860113
Length
118 bp
Sequences
Splice sites
3' ss Seq
TGACCTGCCTGTTTTCCCAGTTT
3' ss Score
7.84
5' ss Seq
CCTGTGAGT
5' ss Score
7.21
Exon sequences
Seq C1 exon
GTTATGCAGGCTTTGTCCCTCGGTTTGCCTGGGTGATGGGGATGAATTATCGCGATGGGGTCACACAGGCTATGGACGAGTTCGACAAGAGCCAG
Seq A exon
TTTCTGCTCAGAAATCCCATCTGTGCCCTGGGTGAGAGGCTGCCCAGCACACACTGGCCCAGCAACACCATCTACAGAAGCCAGGGCCTGATACCCTTCTACATGGGCTTCATACCCT
Seq C2 exon
CCATGCAGGACAACTACGCACTGACCTTCGGCAACAGCACCCGCAAGGCCTATCAGAAGGAACTGGAGAGGCGCAGCCGGACACTATGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004095_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.103
Domain overlap (PFAM):
C1:
NO
A:
PF106294=DUF2475=PU(31.0=32.5)
C2:
PF106294=DUF2475=PD(66.7=93.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTATGCAGGCTTTGTCCCTCG
R:
CATAGTGTCCGGCTGCGC
Band lengths:
182-300
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development