HsaEX6064266 @ hg19
Exon Skipping
Gene
ENSG00000188163 | FAM166A
Description
family with sequence similarity 166, member A [Source:HGNC Symbol;Acc:33818]
Coordinates
chr9:140138036-140139188:-
Coord C1 exon
chr9:140139094-140139188
Coord A exon
chr9:140138623-140138740
Coord C2 exon
chr9:140138036-140138240
Length
118 bp
Sequences
Splice sites
3' ss Seq
GCACCTTCCTGTCTCCCCAGTTC
3' ss Score
9.63
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
Exon sequences
Seq C1 exon
GCTATGCTGGCTTCATTCCCCGTTTCACCTGGGTAATGGGGTTGAATTACCGAGACGGCGTCATGCAAGCCATGGACGAATTCGACAAGAGCCAG
Seq A exon
TTCCTGTTTAGAAACCCCCACTGTGACCTGGGCGAGAAGCTGCCTGGAACACACTGGCCCAGCAACCACATCTACAGCAGCCAAGGCCTGATCCCCTTCTACATGGGGTTCATCCCCG
Seq C2 exon
CCATGCAGGACAACTACGCCCTGACATTCGGCAACAGCACCCGGAGGGCCTACTGGAAGGAATGGGCAAAGCGAAACCACACACTATGAAAATGCTTTAATGGTGGTGTCTGTACAGCATGGATGTGGACAGGGAAAACAGCAAGTGCACACAGTGGGACAGGCCACAGGACAGGCTGGGAGTGAATAAAGAGTTCACACTGCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000188163-'6-6,'6-5,7-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.121 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTATGCTGGCTTCATTCCCCG
R:
TGCACTTGCTGTTTTCCCTGT
Band lengths:
243-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)