MmuEX0036566 @ mm9
Exon Skipping
Gene
ENSMUSG00000042133 | Ppig
Description
peptidyl-prolyl isomerase G (cyclophilin G) [Source:MGI Symbol;Acc:MGI:2445173]
Coordinates
chr2:69560602-69569870:+
Coord C1 exon
chr2:69560602-69561014
Coord A exon
chr2:69569548-69569637
Coord C2 exon
chr2:69569803-69569870
Length
90 bp
Sequences
Splice sites
3' ss Seq
ATCCCCACCTTTCATTTCAGGTG
3' ss Score
10.23
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
Exon sequences
Seq C1 exon
GAGCGTTTGCTGAAGGTTCCTTGGAGGCAGAACGTCTCTCTAAATACCTCGACAGAGGATGTCACTGTTTATAAAGTGATGCGCATCATTTCGGGAGCGCTGTGACATTCTGACGGATCCACACCGATCCAATCAACTCTCAGAAACCATCAAGCGACCCGTCGGGAACGTATTTTAAAAGGCAGAAGAGACCCTACAAGCTCAAGGAGAAGATGCTGACGTCAGCCCGGGAACGCCGGGAGTCGCCGGCACCCATCCCTGACGTACTTCCGGCGCGACACCTTCCCTCCACGCCTGGCCTGGGCTGTGGGGGAGGGAGGCGGTTAGTGGGCTTTAGCGCCTTTCCTGACGGCGGTAGATTTGAAGCGCTTTCCAGGACCGGGCCGGGAGACGAGAAGCCCGCGGCGGGGCAG
Seq A exon
GTGTAGTAACATGCACCTGTCATCCCAGCAGCATTCAGGAGGCTGAGGCAGAAGGATTGCCATAAATTGTAGGCCAGCCTAGGCTATAAA
Seq C2 exon
GAGCAAAACAATTGGCTCAGTCATTCTTGGTGGATTTTTGTTTTTTTATTGTTTCCCCCAACTTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042133-'0-8,'0-7,4-8
Average complexity
C2
Mappability confidence:
88%=100=75%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTACTTCCGGCGCGACAC
R:
CCACCAAGAATGACTGAGCCA
Band lengths:
183-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: