MmuEX0015277 @ mm9
Exon Skipping
Gene
ENSMUSG00000075467 | Dnlz
Description
DNL-type zinc finger [Source:MGI Symbol;Acc:MGI:106559]
Coordinates
chr2:26203641-26207630:-
Coord C1 exon
chr2:26207293-26207630
Coord A exon
chr2:26206855-26206994
Coord C2 exon
chr2:26203641-26206078
Length
140 bp
Sequences
Splice sites
3' ss Seq
CACCTCTCTAACCCAGCTAGGTC
3' ss Score
2.35
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
GAAGAGGGCCGCTTCCGGCCGCTGCGCCCGTTACCAAAATGGTCGACGCAGCTTCACGGGGCGGTGCAAGAAAAGGTGGCTAAGGATTCGCAGGCGGGATGTTGCGGACAGCGCTGAGCCGCATGCCGACACTACTTCGTAGTGTGCGGACCCGGGATTCCGGACCGCGGCGGCTTTGGGATTTGGGGGCTCGCCTAAAGACCGCGGAGAGACTTCGGGGCTGGGCCTGGGGCTGGGCCTCGGGCTGGCGGAGCTCGAGCTCCGCGCCGGGATCAGGGCGTGCGGCGGCGCTGGGGCGCGTGGAAGCGGACCACTATCAACTCGTCTACACCTGCAAG
Seq A exon
GTCTGTGGGACTCGGTCATCCAAGCGCATCTCAAAGTTGGCCTATCACCAGGGCGTGGTCATCGTGACTTGCCCTGGTTGCCAGAACCACCACATCATCGCAGACAACCTAAGCTGGTTCTCTGACCTGAAGGGGAAGAG
Seq C2 exon
GAATATTGAAGAGATCCTAGCAGCCAGAGGAGAGGAGGTACGCCGAGTGTCTGGTGACGGTGCCCTGGAACTGATTCTGGAGGCTGCTGTACCCCCTGACACCCCAGAAGGGGATGAGGATCCCCCCAACCCTGGCAAGATGGGACAGAGCTGATCTGCATACTCCTACAGCTGCAGACTCCAGTCTTCCCAAAAGTCGCTCCCTTCACTTGGAGCCTCACAAGCCTGCTGCTGTTCCTTGTCAGTAAAAAGCCATCACCTCCAGGCACCGGGCCTGGGCTCCTGTTTTTCTCTTGTGAAGTCAGAACAACTCTGTGGCTGTAGGAGCCCAGCCTCATGCCCACCCATGATAGCCACAGTGGTGGCTTCGGGGGTGGCTTTGTCCCAGTGCAGTCGGTCTCCTTCTTAAGTAGGGCTGGATCTGGTCTTGAGTTAGGCTCGTGGCCTCAGGTGGTTTTTTGTTCCTCAGAGCTCTTTACTTCTTCCTTCTATATGACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000075467_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.025 A=0.000 C2=0.471
Domain overlap (PFAM):
C1:
PF0115514=HypA=PU(41.8=35.0),PF052078=zf-CSL=PU(34.1=18.8),PF051807=zf-DNL=PU(10.3=8.8)
A:
PF0115514=HypA=PD(55.2=78.7),PF052078=zf-CSL=PD(61.4=57.4),PF051807=zf-DNL=FE(67.6=100)
C2:
PF051807=zf-DNL=PD(19.1=25.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATTTGGGGGCTCGCCTAAAG
R:
GCAGCCTCCAGAATCAGTTCC
Band lengths:
246-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types