BtaEX6047150 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012880 | DNLZ
Description
DNL-type zinc finger [Source:HGNC Symbol;Acc:HGNC:33879]
Coordinates
chr11:103874072-103875832:-
Coord C1 exon
chr11:103875598-103875832
Coord A exon
chr11:103875044-103875183
Coord C2 exon
chr11:103874072-103874325
Length
140 bp
Sequences
Splice sites
3' ss Seq
CACTTTGGAGTCTCCCCAAGGTC
3' ss Score
0.96
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
ATATGGCAGCGGGGCGGGGCGGCCGGCGGGCGGCATGCTGCGGGCGGCGTTGAGCCACGTGCCGATACTGTTGAGCTGCGCGCGGCCCCGCGGGCCCAGCCCGAGGTGGCTGTGGGATCGCCGGGCCCGCCTGCAGGCCGCGGGGACAAGGCGGGCCTGGGGGTGGGGCTGGCGGCGCTTGAGCTCCGAGCCGGGACCCGGGCCGGCGCACTACCAGCTTGTCTACACCTGCAAG
Seq A exon
GTCTGTGGGACCAGGTCCTCGAAGCGCATCTCCAAGCTCGCCTATCACCAGGGTGTGGTCATTGTGACTTGCCCGGGCTGCCAGAACCACCACATCATCGCCGACAACCTGGGCTGGTTCTCAGACCTGGATGGCAAGAG
Seq C2 exon
GAATATTGAAGAAATCCTGGCAGCCAGAGGGGAGAAGGTACGCCGAGTGGCTGGCGATGGGGCCCTGGAGCTCCTTTTAGAGGCTGCGGGGCCCCCCAAACCCACCACTGCTGCGGAAGGGGCTGAGGACCAGGATTCCACCCAGCCCAGCAAGACGGAGGCTAGCTGACCCGTCTTCTGCCTTGGAGAAGGGTGCTCCAGCCCTGGGCTACTCTGGACGTGCCTGTTTTCCATCAATAAACAGACTTCACTGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012880-'0-3,'0-0,1-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.518
Domain overlap (PFAM):
C1:
PF051807=zf-DNL=PU(10.3=10.4)
A:
PF051807=zf-DNL=FE(67.6=100)
C2:
PF051807=zf-DNL=PD(19.1=22.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGCTTGTCTACACCTGCAA
R:
GATGGAAAACAGGCACGTCCA
Band lengths:
257-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]