RnoEX0029024 @ rn6
Exon Skipping
Gene
ENSRNOG00000018791 | Dnlz
Description
DNL-type zinc finger [Source:RGD Symbol;Acc:1308635]
Coordinates
chr3:3796480-3798177:-
Coord C1 exon
chr3:3797921-3798177
Coord A exon
chr3:3797552-3797691
Coord C2 exon
chr3:3796480-3796756
Length
140 bp
Sequences
Splice sites
3' ss Seq
CACCTCTCTAACCCAACTAGGTC
3' ss Score
6.67
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
TCGTCGTGGTGACGGTGCCCTGGAACGGCATGTTGCGGACAGCGCTGAGCCGCATGCCGACACTACTTCGTAGTGTGAGGACCCGGGATTCCGGACCGCGGCAGCTTTGGGATTTGGGGGCTCGCCTAAAAACCGCGAAGAGACTTCGGGGCTGGGCCTGGGGCTGGCGGAGCTCGAGCTCCGCGCCGGGATCAGAGCATGCGGCGGCGCTAGGGCGCGTGAAAGCGGACCACTACCAGCTCGTCTACACCTGCAAG
Seq A exon
GTCTGTGGGACTCGGTCATCCAAGCACATCTCAAAGTTGGCCTATCACCAGGGTGTGGTCATCGTGACTTGCCCTGGTTGCCAGAACCACCACATCATCGCAGACAACCTAAGCTGGTTCTCTGACCTGAAGGGGAAGAG
Seq C2 exon
GAACATTGAAGAGATCCTAGCAGCCAGAGGAGAGGAGGTACGCCGGGTGTGCGGTGACGGTGCCTTGGAACTGATTCTGGAGGTGGCTGAACCACCTGCCACCCCAGAAGGGGGTGAAGATCCCACTCACCCCGGCAAGATGGACCAGAGCTGACCCCGTACACTCTTGCAACTGTGGACTCCTCCAACTTCAGACTCCAGTCTTCCCAAAAGTCTCCCCCTTCACTTGGAGCCTCTCCAGCCTGCTGTTCTCTGTCAGTAAACAACTGTCAATCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018791_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.026 A=0.000 C2=0.451
Domain overlap (PFAM):
C1:
PF051807=zf-DNL=PU(10.3=9.2)
A:
PF051807=zf-DNL=FE(67.6=100)
C2:
PF051807=zf-DNL=PD(19.1=25.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCTCGTCTACACCTGCAAG
R:
CTCCAAGTGAAGGGGGAGACT
Band lengths:
253-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]