DreEX6082848 @ danRer10
Exon Skipping
Gene
ENSDARG00000068655 | dnlz
Description
DNL-type zinc finger [Source:ZFIN;Acc:ZDB-GENE-070112-1482]
Coordinates
chr21:4081292-4086117:-
Coord C1 exon
chr21:4085744-4086117
Coord A exon
chr21:4083045-4083184
Coord C2 exon
chr21:4081292-4082105
Length
140 bp
Sequences
Splice sites
3' ss Seq
TTCTTCACTCTTGCGTTCAGGTT
3' ss Score
8.56
5' ss Seq
AAGGTATGT
5' ss Score
9.79
Exon sequences
Seq C1 exon
ATGTCTGACGTCATCAGCAAGCGACGAGCGATTGTATTCAACTCGCTGCGAGCAGAAATGTCAAATATCGTTATTAGGAAAGCAGCGGGTGTTAAAATAGAATAAAAGTTAGGACAATGAACTCTCGACTGTGTTACTTGTTATTCAGACCGAGATTACTCCGATCACGTGGTGCGGGAGTCCTGTCAGTGCCCGAAACACAGCGAATAGCCAGAGTAACACATGAGGAGTCAAACAGCGCCTTCACTAACTCAACACTGAGGTCTGATGTGGGACACGATGCAGGATTAGGATTGAGTTTCTGCAGGAGTTTCTCCACCGAAGCCATCGGACAGCTGCAGTCCACACACTATCACCTGGTATACACCTGCAAA
Seq A exon
GTTTGCTCCACTCGCTCCATGAAGAAAATCTCCAAGCTGGCCTATCACAAGGGTGTCGTCATAGTTACCTGTCCTGGGTGCAAGAACCATCACGTCATCGCTGATAATCTGAAGTGGTTCTCGGACCTGGAGGGGAAAAG
Seq C2 exon
AAACATCGAGGAGATTCTGGCTGCTAAAGGGGAATCGGTGCGAAGAGTTGAAGGAAGCGAGGCTCTGGAGATTGTTAACGAAGAATCCAGAAATAATCCAGATGAACAGAAACCAGCACATCTGAGCGACGGTTCAGACAAAACATGATGGATATTTATACTGACTGTCTGCCACTGGTTATCTTATCAGGTCTAGTAATTCCTTGCATCATATTGTTATAGTTTTAATACATTTGTTCTATTAAAGCACTGTAAAATTAAATAAATCATCACCTCAAGACTTTTGATGTTATTTTGAAGTGTTCTGCTCCCCCTGGTGGTCACTGCAACATTTACACTTGGCTTATTTTAGAGAGCTTTGACTGGAAAACATAAAAACAGCTTAATCGATAACATTTTTCCACAAACAACCAATGAGTACAAGCAAAAACACAAAAAGAAGAGGCTTAGACATTCTGAAATGGACTAAAACAGCAGTGTTTTAATCATTACTTTAGTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000068655-'2-1,'2-0,4-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.023 A=0.000 C2=0.571
Domain overlap (PFAM):
C1:
PF051807=zf-DNL=PU(10.3=8.1)
A:
PF051807=zf-DNL=FE(67.6=100)
C2:
PF051807=zf-DNL=PD(19.1=26.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCCGAAACACAGCGAATAG
R:
GAGCCTCGCTTCCTTCAACTC
Band lengths:
250-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]