HsaEX0020435 @ hg19
Exon Skipping
Gene
ENSG00000213221 | DNLZ
Description
DNL-type zinc finger [Source:HGNC Symbol;Acc:33879]
Coordinates
chr9:139256352-139258241:-
Coord C1 exon
chr9:139257939-139258241
Coord A exon
chr9:139257441-139257580
Coord C2 exon
chr9:139256352-139256632
Length
140 bp
Sequences
Splice sites
3' ss Seq
AGCTACCCTGTCCCAGCCAGGTC
3' ss Score
1.99
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
GCTTCCGCCCGGCGCCCACTTCCAAGATGGCGGCGGGGCGGGGCCGGGGCAGGGCGGACGGAGCCGGCGAGCGGGATGCTGCGGACTGCGCTGCGCGGCGCGCCGAGGTTGCTGAGTCGCGTGCAGCCCCGGGCGCCCTGCCTGAGGCGGCTGTGGGGCCGCGGGGCCCGTCCAGAGGTCGCGGGGAGGCGGCGGGCCTGGGCCTGGGGCTGGCGGCGCTCAAGCTCCGAGCAGGGGCCGGGGCCCGCGGCGGCTCTGGGGCGCGTGGAGGCGGCGCACTACCAGCTCGTCTACACCTGCAAG
Seq A exon
GTCTGCGGGACTAGGTCCTCCAAGCGCATCTCCAAGCTGGCCTATCACCAAGGCGTGGTCATTGTGACCTGCCCCGGCTGCCAGAACCACCATATCATCGCTGACAACCTGGGCTGGTTCTCGGACCTGAATGGGAAGAG
Seq C2 exon
AAATATCGAAGAGATCCTGACGGCCAGAGGCGAGCAGGTGCACCGTGTGGCGGGCGAGGGGGCCCTGGAACTGGTTCTGGAGGCTGCAGGGGCCCCCACATCCACTGCAGCTCCGGAAGCGGGTGAGGATGAGGGTCCCCCCAGCCCTGGCAAGACGGAGCCGAGCTGACTCCTGCGCTCCCCGGCACTGTGGGACTTCGGCCTTCCAGAAGGAGGTTTTGGCCCTGGGCCTCTCTGGACGTGGCCTGTTTTCTATCAATAAACAGACATTACTTCCAGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000213221_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.105 A=0.000 C2=0.584
Domain overlap (PFAM):
C1:
PF051807=zf-DNL=PU(10.3=9.2)
A:
PF051807=zf-DNL=FE(67.6=100)
C2:
PF051807=zf-DNL=PD(19.1=22.8)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCTCGTCTACACCTGCAAG
R:
CAGGGCCAAAACCTCCTTCTG
Band lengths:
248-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)