GgaEX0002286 @ galGal4
Exon Skipping
Gene
ENSGALG00000001881 | DNLZ
Description
DNL-type zinc finger [Source:HGNC Symbol;Acc:HGNC:33879]
Coordinates
chr17:7916338-7917860:+
Coord C1 exon
chr17:7916338-7916559
Coord A exon
chr17:7916639-7916778
Coord C2 exon
chr17:7917235-7917860
Length
140 bp
Sequences
Splice sites
3' ss Seq
TAACGGAGCACGCCTTGCAGGTG
3' ss Score
2.38
5' ss Seq
GAGGTGCGT
5' ss Score
8.42
Exon sequences
Seq C1 exon
AGGCGGTCTCTGTGGGACCGGCCGCGCAGCGTCAGCGCCGCCCCCTTCTGCGCATGCGCGGCCGCCATGTTGCGGCGCTTGGGGCGGGCGGCGGTGCGCGCCGCGCTCAGCGCCTCAGCGCCTCCACAGCAGCGCCCGGCGCCGCGCCACGCGTGCACCGCACCGCCGGACAGCGTGGGGCGGCTGCAGCCGTCGCATTACCGCCTGGTGTACACCTGCAAG
Seq A exon
GTGTGCCGGCGCCGCACGGCGCAGAACATCTCCCGCCTGGCGTACAGCCGCGGCGTCGTCATCGTCACGTGCCCCGGCTGCCACAGCCATCACGTGATCGCCGACAACCTGGGCTGGTTCTCCGACCTGCAGGGCAAGAG
Seq C2 exon
GAATATCGAGGAGATCCTGGCAGCCAAAGGGGAGAAGGTGAGACGTGTGCTTGGTGAGGAAGCCCTGGAGCTGCTGCCAGAAGGCGGGGCAGATGCTGGCGGCCCTCAGAGCCCTCCTACAGAGGGAGAAAGTGGGGACCCCCCCCCAGAGACTGACGGCAAGGGACGGACCTGAGTGGGATTGGTGGCGTTCTGCTGATGGCAAGAGAGACTTTCGTGTTTCTGCCTTCATGTCAATGCGCTGTGCTTAGAATAAATGTGGGTGTCCATCTCCTCTCTCTGTCGTGTTTTTGGTTGGTGTAGTTCTGCCTTTGGCCAAGCTGGTCATGTCAGAGTTGGGCTGTGGATATTTTTCTTGGTACTTTTGCTGTTGGTAAAGCAGTTTTAGGTGCTTCAGCAGCACTGAGAAGCCTGCTTTGTTCTCAGGTGAGAGTGGAACAAATGATTTCTGACTGGTTGCTTTGCTCAGGCCTGTGTGGCACTAACTGGAGGTTCTAGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001881-'0-5,'0-0,2-5
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.257 A=0.000 C2=0.690
Domain overlap (PFAM):
C1:
PF051807=zf-DNL=PU(10.3=9.5)
A:
PF051807=zf-DNL=FE(67.6=100)
C2:
PF051807=zf-DNL=PD(19.1=22.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCGGTCTCTGTGGGAC
R:
GCTGCCAGGATCTCCTCGATA
Band lengths:
246-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]