GgaALTA0000846-2/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000001881 | DNLZ
Description
DNL-type zinc finger [Source:HGNC Symbol;Acc:HGNC:33879]
Coordinates
chr17:7916338-7917860:+
Coord C1 exon
chr17:7916338-7916559
Coord A exon
chr17:7917204-7917234
Coord C2 exon
chr17:7917235-7917860
Length
31 bp
Sequences
Splice sites
5' ss Seq
AAGGTGCGG
5' ss Score
8.17
3' ss Seq
CCCTCTGGCCTTTGCTGTAGCGT
3' ss Score
8.71
Exon sequences
Seq C1 exon
AGGCGGTCTCTGTGGGACCGGCCGCGCAGCGTCAGCGCCGCCCCCTTCTGCGCATGCGCGGCCGCCATGTTGCGGCGCTTGGGGCGGGCGGCGGTGCGCGCCGCGCTCAGCGCCTCAGCGCCTCCACAGCAGCGCCCGGCGCCGCGCCACGCGTGCACCGCACCGCCGGACAGCGTGGGGCGGCTGCAGCCGTCGCATTACCGCCTGGTGTACACCTGCAAG
Seq A exon
CGTCACTGTTGGCTTTCACGTTGCTGTTAAG
Seq C2 exon
GAATATCGAGGAGATCCTGGCAGCCAAAGGGGAGAAGGTGAGACGTGTGCTTGGTGAGGAAGCCCTGGAGCTGCTGCCAGAAGGCGGGGCAGATGCTGGCGGCCCTCAGAGCCCTCCTACAGAGGGAGAAAGTGGGGACCCCCCCCCAGAGACTGACGGCAAGGGACGGACCTGAGTGGGATTGGTGGCGTTCTGCTGATGGCAAGAGAGACTTTCGTGTTTCTGCCTTCATGTCAATGCGCTGTGCTTAGAATAAATGTGGGTGTCCATCTCCTCTCTCTGTCGTGTTTTTGGTTGGTGTAGTTCTGCCTTTGGCCAAGCTGGTCATGTCAGAGTTGGGCTGTGGATATTTTTCTTGGTACTTTTGCTGTTGGTAAAGCAGTTTTAGGTGCTTCAGCAGCACTGAGAAGCCTGCTTTGTTCTCAGGTGAGAGTGGAACAAATGATTTCTGACTGGTTGCTTTGCTCAGGCCTGTGTGGCACTAACTGGAGGTTCTAGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001881-0-5,0-4-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.257 A=NA C2=0.690
Domain overlap (PFAM):
C1:
PF051807=zf-DNL=PU(10.3=9.5)
A:
NA
C2:
PF051807=zf-DNL=PD(19.1=22.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCAGCCGTCGCATTACC
R:
CTTCTGGCAGCAGCTCCAG
Band lengths:
122-153
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]