GgaALTA0000846-2/2 @ galGal3
Alternative 3'ss
Gene
ENSGALG00000001881 | DNLZ
Description
NA
Coordinates
chr17:8605738-8606434:+
Coord C1 exon
chr17:8605738-8605877
Coord A exon
chr17:8606303-8606333
Coord C2 exon
chr17:8606334-8606434
Length
31 bp
Sequences
Splice sites
5' ss Seq
GAGGTGCGT
5' ss Score
8.42
3' ss Seq
CCCTCTGGCCTTTGCTGTAGCGT
3' ss Score
8.71
Exon sequences
Seq C1 exon
GTGTGCCGGCGCCGCACGGCGCAGAACATCTCCCGCCTGGCGTACAGCCGCGGCGTCGTCATCGTCACGTGCCCCGGCTGCCACAGCCATCACGTGATCGCCGACAACCTGGGCTGGTTCTCCGACCTGCAGGGCAAGAG
Seq A exon
CGTCACTGTTGGCTTTCACGTTGCTGTTAAG
Seq C2 exon
GAATATCGAGGAGATCCTGGCAGCCAAAGGGGAGAAGGTGAGACGTGTGCTTGGTGAGGAAGCCCTGGAGCTGCTGCCAGAAGGCGGGGCAGATGCTGGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001881-1-4,1-3-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.690
Domain overlap (PFAM):
C1:
PF051807=zf-DNL=FE(67.6=100)
A:
NA
C2:
PF051807=zf-DNL=PD(19.1=22.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCACGTGATCGCCGACAA
R:
CTTCCTCACCAAGCACACGTC
Band lengths:
115-146
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]