GgaEX0002287 @ galGal3
Exon Skipping
Gene
ENSGALG00000001881 | DNLZ
Description
NA
Coordinates
chr17:8605738-8606403:+
Coord C1 exon
chr17:8605738-8605877
Coord A exon
chr17:8606004-8606162
Coord C2 exon
chr17:8606303-8606403
Length
159 bp
Sequences
Splice sites
3' ss Seq
GCTGCTCGGTTCTCCCTCAGGCT
3' ss Score
7.37
5' ss Seq
GGGGTAAGA
5' ss Score
7.83
Exon sequences
Seq C1 exon
GTGTGCCGGCGCCGCACGGCGCAGAACATCTCCCGCCTGGCGTACAGCCGCGGCGTCGTCATCGTCACGTGCCCCGGCTGCCACAGCCATCACGTGATCGCCGACAACCTGGGCTGGTTCTCCGACCTGCAGGGCAAGAG
Seq A exon
GCTCCGTTCCATCGCTGCTGGGTCCCCCCCAGCTGTGAGCATCTCAGGCACGGGATGCTGTCAGCTCCCTCGTCCTGCCGAACTTCGGTGATTTCCCACTCCTTTTGATGCCCTTAAAAACGAGTTTTGCAGTAATTGCTGAATGATTGATCCTATGGG
Seq C2 exon
CGTCACTGTTGGCTTTCACGTTGCTGTTAAGGAATATCGAGGAGATCCTGGCAGCCAAAGGGGAGAAGGTGAGACGTGTGCTTGGTGAGGAAGCCCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001881-'1-3,'1-1,3-3
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
PF051807=zf-DNL=FE(67.6=100)
A:
PF051807=zf-DNL=PD(12.7=25.8)
C2:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACGGCGCAGAACATCTCC
R:
CTCCAGGGCTTCCTCACCAAG
Band lengths:
227-386
Functional annotations
There are 0 annotated functions for this event