GgaEX0002287 @ galGal4
Exon Skipping
Gene
ENSGALG00000001881 | DNLZ
Description
DNL-type zinc finger [Source:HGNC Symbol;Acc:HGNC:33879]
Coordinates
chr17:7916639-7917860:+
Coord C1 exon
chr17:7916639-7916778
Coord A exon
chr17:7916905-7917063
Coord C2 exon
chr17:7917235-7917860
Length
159 bp
Sequences
Splice sites
3' ss Seq
GCTGCTCGGTTCTCCCTCAGGCT
3' ss Score
7.37
5' ss Seq
GGGGTAAGA
5' ss Score
7.83
Exon sequences
Seq C1 exon
GTGTGCCGGCGCCGCACGGCGCAGAACATCTCCCGCCTGGCGTACAGCCGCGGCGTCGTCATCGTCACGTGCCCCGGCTGCCACAGCCATCACGTGATCGCCGACAACCTGGGCTGGTTCTCCGACCTGCAGGGCAAGAG
Seq A exon
GCTCCGTTCCATCGCTGCTGGGTCCCCCCCAGCTGTGAGCATCTCAGGCACGGGATGCTGTCAGCTCCCTCGTCCTGCCGAACTTCGGTGATTTCCCACTCCTTTTGATGCCCTTAAAAACGAGTTTTGCAGTAATTGCTGAATGATTGATCCTATGGG
Seq C2 exon
GAATATCGAGGAGATCCTGGCAGCCAAAGGGGAGAAGGTGAGACGTGTGCTTGGTGAGGAAGCCCTGGAGCTGCTGCCAGAAGGCGGGGCAGATGCTGGCGGCCCTCAGAGCCCTCCTACAGAGGGAGAAAGTGGGGACCCCCCCCCAGAGACTGACGGCAAGGGACGGACCTGAGTGGGATTGGTGGCGTTCTGCTGATGGCAAGAGAGACTTTCGTGTTTCTGCCTTCATGTCAATGCGCTGTGCTTAGAATAAATGTGGGTGTCCATCTCCTCTCTCTGTCGTGTTTTTGGTTGGTGTAGTTCTGCCTTTGGCCAAGCTGGTCATGTCAGAGTTGGGCTGTGGATATTTTTCTTGGTACTTTTGCTGTTGGTAAAGCAGTTTTAGGTGCTTCAGCAGCACTGAGAAGCCTGCTTTGTTCTCAGGTGAGAGTGGAACAAATGATTTCTGACTGGTTGCTTTGCTCAGGCCTGTGTGGCACTAACTGGAGGTTCTAGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001881_MULTIEX1-1/3=C1-2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.690
Domain overlap (PFAM):
C1:
PF051807=zf-DNL=FE(67.6=100)
A:
PF051807=zf-DNL=PD(12.7=25.8)
C2:
PF051807=zf-DNL=PD(19.1=22.0)
Main Inclusion Isoform:
ENSGALT00000002916fB250
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCACGTGATCGCCGACAA
R:
ATCAGCAGAACGCCACCAATC
Band lengths:
253-412
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]