GgaEX1020476 @ galGal4
Exon Skipping
Gene
ENSGALG00000001881 | DNLZ
Description
DNL-type zinc finger [Source:HGNC Symbol;Acc:HGNC:33879]
Coordinates
chr17:7916639-7917860:+
Coord C1 exon
chr17:7916639-7916778
Coord A exon
chr17:7917235-7917660
Coord C2 exon
chr17:7917756-7917860
Length
426 bp
Sequences
Splice sites
3' ss Seq
GCTTTCACGTTGCTGTTAAGGAA
3' ss Score
4.11
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
GTGTGCCGGCGCCGCACGGCGCAGAACATCTCCCGCCTGGCGTACAGCCGCGGCGTCGTCATCGTCACGTGCCCCGGCTGCCACAGCCATCACGTGATCGCCGACAACCTGGGCTGGTTCTCCGACCTGCAGGGCAAGAG
Seq A exon
GAATATCGAGGAGATCCTGGCAGCCAAAGGGGAGAAGGTGAGACGTGTGCTTGGTGAGGAAGCCCTGGAGCTGCTGCCAGAAGGCGGGGCAGATGCTGGCGGCCCTCAGAGCCCTCCTACAGAGGGAGAAAGTGGGGACCCCCCCCCAGAGACTGACGGCAAGGGACGGACCTGAGTGGGATTGGTGGCGTTCTGCTGATGGCAAGAGAGACTTTCGTGTTTCTGCCTTCATGTCAATGCGCTGTGCTTAGAATAAATGTGGGTGTCCATCTCCTCTCTCTGTCGTGTTTTTGGTTGGTGTAGTTCTGCCTTTGGCCAAGCTGGTCATGTCAGAGTTGGGCTGTGGATATTTTTCTTGGTACTTTTGCTGTTGGTAAAGCAGTTTTAGGTGCTTCAGCAGCACTGAGAAGCCTGCTTTGTTCTCAG
Seq C2 exon
GTGTTGCACATCAGCAGCTGATTGCAGTGCTCTTGGAGGTGCATGGCATGGCAGCTGAGCAGAAGAGGCAATTGGGACCACCTGAGGACATGGCCCTGACCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001881_MULTIEX1-2/3=C1-3
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.690 C2=0.690
Domain overlap (PFAM):
C1:
PF051807=zf-DNL=FE(67.6=100)
A:
PF051807=zf-DNL=PD(19.1=22.0)
C2:
PF051807=zf-DNL=PD(19.1=22.0)
Main Skipping Isoform:
ENSGALT00000002916fB250
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACGGCGCAGAACATCTCC
R:
CTGTGGTCAGGGCCATGTC
Band lengths:
231-657
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]