GgaINT0126264 @ galGal4
Intron Retention
Gene
ENSGALG00000001881 | DNLZ
Description
DNL-type zinc finger [Source:HGNC Symbol;Acc:HGNC:33879]
Coordinates
chr17:7916639-7917860:+
Coord C1 exon
chr17:7916639-7916778
Coord A exon
chr17:7916779-7917234
Coord C2 exon
chr17:7917235-7917860
Length
456 bp
Sequences
Splice sites
5' ss Seq
GAGGTGCGT
5' ss Score
8.42
3' ss Seq
GCTTTCACGTTGCTGTTAAGGAA
3' ss Score
4.11
Exon sequences
Seq C1 exon
GTGTGCCGGCGCCGCACGGCGCAGAACATCTCCCGCCTGGCGTACAGCCGCGGCGTCGTCATCGTCACGTGCCCCGGCTGCCACAGCCATCACGTGATCGCCGACAACCTGGGCTGGTTCTCCGACCTGCAGGGCAAGAG
Seq A exon
GTGCGTGCGGGCGGGGCGGGGCGGGGCGGGGCGGGGCGGGGCGGGCTGCGTCCCACCCGCTGCCTCACAGCCCTCACTGAGGGCCCGGTGAGGCGCTGCTCCGCGTGCTGCTCGGTTCTCCCTCAGGCTCCGTTCCATCGCTGCTGGGTCCCCCCCAGCTGTGAGCATCTCAGGCACGGGATGCTGTCAGCTCCCTCGTCCTGCCGAACTTCGGTGATTTCCCACTCCTTTTGATGCCCTTAAAAACGAGTTTTGCAGTAATTGCTGAATGATTGATCCTATGGGGTAAGAACAGCCCTACGAGGTCGGGGTAGTCCTGTCTGCTTCCCAGACAGCTTCCAGGAGGATGTCCCATTTCGCTGTGTGGTGTTTGTTACCAAGAGCAAAGCCCCACAGCAGGCTCTTCCCTCTGGCCTTTGCTGTAGCGTCACTGTTGGCTTTCACGTTGCTGTTAAG
Seq C2 exon
GAATATCGAGGAGATCCTGGCAGCCAAAGGGGAGAAGGTGAGACGTGTGCTTGGTGAGGAAGCCCTGGAGCTGCTGCCAGAAGGCGGGGCAGATGCTGGCGGCCCTCAGAGCCCTCCTACAGAGGGAGAAAGTGGGGACCCCCCCCCAGAGACTGACGGCAAGGGACGGACCTGAGTGGGATTGGTGGCGTTCTGCTGATGGCAAGAGAGACTTTCGTGTTTCTGCCTTCATGTCAATGCGCTGTGCTTAGAATAAATGTGGGTGTCCATCTCCTCTCTCTGTCGTGTTTTTGGTTGGTGTAGTTCTGCCTTTGGCCAAGCTGGTCATGTCAGAGTTGGGCTGTGGATATTTTTCTTGGTACTTTTGCTGTTGGTAAAGCAGTTTTAGGTGCTTCAGCAGCACTGAGAAGCCTGCTTTGTTCTCAGGTGAGAGTGGAACAAATGATTTCTGACTGGTTGCTTTGCTCAGGCCTGTGTGGCACTAACTGGAGGTTCTAGCAGTGTCCTTTGGCCTTGTCCAGGTGTTGCACATCAGCAGCTGATTGCAGTGCTCTTGGAGGTGCATGGCATGGCAGCTGAGCAGAAGAGGCAATTGGGACCACCTGAGGACATGGCCCTGACCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001881:ENSGALT00000002916:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.690
Domain overlap (PFAM):
C1:
PF051807=zf-DNL=FE(67.6=100)
A:
NA
C2:
PF051807=zf-DNL=PD(19.1=22.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACAGCCATCACGTGATCG
R:
ACACGACAGAGAGAGGAGATGG
Band lengths:
348-804
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]