BtaINT0051300 @ bosTau6
Intron Retention
Gene
ENSBTAG00000012880 | DNLZ
Description
DNL-type zinc finger [Source:HGNC Symbol;Acc:HGNC:33879]
Coordinates
chr11:103874072-103875183:-
Coord C1 exon
chr11:103875044-103875183
Coord A exon
chr11:103874326-103875043
Coord C2 exon
chr11:103874072-103874325
Length
718 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
AGCACCTCTCTCTTTCTCAGGAA
3' ss Score
9.61
Exon sequences
Seq C1 exon
GTCTGTGGGACCAGGTCCTCGAAGCGCATCTCCAAGCTCGCCTATCACCAGGGTGTGGTCATTGTGACTTGCCCGGGCTGCCAGAACCACCACATCATCGCCGACAACCTGGGCTGGTTCTCAGACCTGGATGGCAAGAG
Seq A exon
GTGAGGTCTGCCTGGGCAGGGCTGAGGACAGAGGCCTGTATCCCCCGGGCTAGCCTGGTCCATCCTGAGTCTGTGGCCCCACCCACCGTACCTGGGGCACCGCCCTTCTAAATGAGATTACAGAGCCCAGCTTCCTTGTCAAGAAATGCATGGTTGAACTTGAAATTCAGATGAACCATGATAACTTTTTGGTGGAAGCATGCCCCAAGTATGCGATCTTCTGCCCTAGGCCATCCCCCTTTGGCCCTGCTTCACTGCCTGACCTCTGCTCTCAATACCAGCCTCAGAGGCAGCAGGACCTGGTGACATGTCCCCCTACCCCCAACAGGAGGGATCAGACTAGGTTGACTCTTAAACAGCTTACCTTTCGCTTTGTGGTTCCTTCCTTGACCCTACAAGGCGCTCCTTCCTAAGTATCTGCTATGGGGTGGGGGTCCTAGCATGCACATTTCTGTCCTCTCTGAGGCTGGCAGGCTGCACCAGATGGGGCAGATGTGAGCTAGTGTGGTCCGGGGCTCTGGTCCTGCAGGTCAGCCTCGCCCCCTTGTGGAGAGTGAGGGGCGGCGCGCAGTGAGGGACTGTTCAGGGGCCTCTTGACCGGGTGGTCCTGATGCAACACCAGTGCAGGACCCACACACTTGAGCTTGGCCTGGGGTGCCCTTGAGGGCCCGAGACACAAAACGGCCAAGAAGCGTTACAGCACCTCTCTCTTTCTCAG
Seq C2 exon
GAATATTGAAGAAATCCTGGCAGCCAGAGGGGAGAAGGTACGCCGAGTGGCTGGCGATGGGGCCCTGGAGCTCCTTTTAGAGGCTGCGGGGCCCCCCAAACCCACCACTGCTGCGGAAGGGGCTGAGGACCAGGATTCCACCCAGCCCAGCAAGACGGAGGCTAGCTGACCCGTCTTCTGCCTTGGAGAAGGGTGCTCCAGCCCTGGGCTACTCTGGACGTGCCTGTTTTCCATCAATAAACAGACTTCACTGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012880:ENSBTAT00000017114:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.518
Domain overlap (PFAM):
C1:
PF051807=zf-DNL=FE(67.6=100)
A:
NA
C2:
PF051807=zf-DNL=PD(19.1=22.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATCTCCAAGCTCGCCTATC
R:
GATGGAAAACAGGCACGTCCA
Band lengths:
350-1068
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development