RnoINT0049798 @ rn6
Intron Retention
Gene
ENSRNOG00000018791 | Dnlz
Description
DNL-type zinc finger [Source:RGD Symbol;Acc:1308635]
Coordinates
chr3:3796480-3797691:-
Coord C1 exon
chr3:3797552-3797691
Coord A exon
chr3:3796757-3797551
Coord C2 exon
chr3:3796480-3796756
Length
795 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
CTGCCCTTACTGTCTTATAGGAA
3' ss Score
10.29
Exon sequences
Seq C1 exon
GTCTGTGGGACTCGGTCATCCAAGCACATCTCAAAGTTGGCCTATCACCAGGGTGTGGTCATCGTGACTTGCCCTGGTTGCCAGAACCACCACATCATCGCAGACAACCTAAGCTGGTTCTCTGACCTGAAGGGGAAGAG
Seq A exon
GTGAGGCCCGCTGGGAGGGGTAGGAGACTGTAGGATTGTGTGCCTTTATGAGCCTGGGTCCATCGCCTCTCCTACCTGGATAGCCCAGCTTCCTCCACGTGGATGATCTGGAAGCGGTTGAATTTGAACTTTAGATAAACTATAATCGGCCTCGAATATGGCAAACTAGTTCTGTGGCTCTACCGCTCTCGCTGCCTGACCTCTGATCTCTCCAGTGGCCTCATAACTTTCTAGTGGAGGCTTTTTGTGTTCTGCTAACTCAGGGCAGATGGAAGGGTATGTGTCAGACTGTGAACTGGCACTGGCCTTCAGTTGGTATTCTCACCTTGGGGAGAGCAGTGGGGAGAGCCAGGAGTCAGTTCGGAGGAGATTGGTCTATGGCTAGGACTGATGGTCACTGAGGAAGGATCAATGGCGGGAGTAGGACAGAGCCACAGAGGAGATAGCCTGTGACGAGTGTGCAGGCCTTGGGTCTCTGGTTTACCTCTTAGACCTGTGCTGCAGAGAAATCTCAGCTCTGATAGGTAGGAACAGGACAGAAGTGCAGGAATGGCCGTTACCTAGTGGCTGTTACCTGGTGAGAGGCAGGGCCAAGGCCCTTGGTGGTACACTGTACAGGATAGATGGCTTCTGAGGTGGGACTTGTTAACAGACACATTTGGTGAAGGTGCCATTAGGTGCCTGCAAGGTATTGGTGTCCTGGATGCTGGGACATGTGTTCCAGGCCCAAGATGACCATGGGATGCCCTTGAGGGAGCCCAGAGGAAGGCTGATGCTGCCCTTACTGTCTTATAG
Seq C2 exon
GAACATTGAAGAGATCCTAGCAGCCAGAGGAGAGGAGGTACGCCGGGTGTGCGGTGACGGTGCCTTGGAACTGATTCTGGAGGTGGCTGAACCACCTGCCACCCCAGAAGGGGGTGAAGATCCCACTCACCCCGGCAAGATGGACCAGAGCTGACCCCGTACACTCTTGCAACTGTGGACTCCTCCAACTTCAGACTCCAGTCTTCCCAAAAGTCTCCCCCTTCACTTGGAGCCTCTCCAGCCTGCTGTTCTCTGTCAGTAAACAACTGTCAATCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018791:ENSRNOT00000025386:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.451
Domain overlap (PFAM):
C1:
PF051807=zf-DNL=FE(67.6=100)
A:
NA
C2:
PF051807=zf-DNL=PD(19.1=25.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGTGTGGTCATCGTGACTTG
R:
ACTGACAGAGAACAGCAGGCT
Band lengths:
350-1145
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]