DreINT0058761 @ danRer10
Intron Retention
Gene
ENSDARG00000068655 | dnlz
Description
DNL-type zinc finger [Source:ZFIN;Acc:ZDB-GENE-070112-1482]
Coordinates
chr21:4081292-4083184:-
Coord C1 exon
chr21:4083045-4083184
Coord A exon
chr21:4082106-4083044
Coord C2 exon
chr21:4081292-4082105
Length
939 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGT
5' ss Score
9.79
3' ss Seq
AGCATTGTGTTTTGCCATAGAAA
3' ss Score
7.13
Exon sequences
Seq C1 exon
GTTTGCTCCACTCGCTCCATGAAGAAAATCTCCAAGCTGGCCTATCACAAGGGTGTCGTCATAGTTACCTGTCCTGGGTGCAAGAACCATCACGTCATCGCTGATAATCTGAAGTGGTTCTCGGACCTGGAGGGGAAAAG
Seq A exon
GTATGTGTGTGTATATACAATTCATCTGCGCACATTATTTTAAAGGCAGAATATAAATAAATACCCACAATATAATCATTCTTGTAAAAGAGACCACATCCTAAAAATAAAAAAAAGTACTTAAAACATTATAAATGATTAAGTTTTCATGTATAAAGACCCAATTTTCAGCAGGAAGAATTTAATGATGATAAAGTATTCATTTAAAAACATTTCTTGAGTTTTTTTAACCCCCTAAATTTTGAGTATTGATCATTTATTTATGTTTCAATAAAATTTTTAAATATAAATATTGTTTCGGGCAACGCGGTGGCGCAGTAGGTAGTGCTGTCACCTCAAAGCTAGAAGGTTGCTGGTTTGAGCCTCGGCTTGGTCAGTTGGCGTTTCTGTGAGGAGTTTGCATGTTGTCCATTCATTCGTGTGGGTTTTCTCTGGGTGCTCCGGTTTCCCCTACGGTCCAAAGACATGCACTATAGGAAAAATTGGGTAGGCTAAATTGTCCATAGTGTGTGTGTGTGTGTGTGTGTGTGGATGTTTGCCAGAGATGAGTTGCAGCTGGAAGGGCATCCACTGCATAAAACATATGCTGAATAAGTTGACGGTTCATTCCGCTGTGGCGAAACCAGATTAATAAAGGCCAAAGAAACAAAGCCGAAAATAAAATAAATGAATGAATGAATAGCCGAAAGCCCAAGAAAAATGAATTAACGAATATTATTAGTAATTGATCTAGTTTATTCATCATAATTGAATCACATCTGTATCATTAACGTTTTAATTGCTATGCTTATTTTAAGTTTTTATATTTGTTTATTAATATTTATTTTTATATTTGACATAATATTTAGTTTTTCCTCTCAGCTCCAGTTTGAAATCCCCTGCTTTAAAGCATCCTGAGAATAACTTAACTCGACCACTGAGCATTGTGTTTTGCCATAG
Seq C2 exon
AAACATCGAGGAGATTCTGGCTGCTAAAGGGGAATCGGTGCGAAGAGTTGAAGGAAGCGAGGCTCTGGAGATTGTTAACGAAGAATCCAGAAATAATCCAGATGAACAGAAACCAGCACATCTGAGCGACGGTTCAGACAAAACATGATGGATATTTATACTGACTGTCTGCCACTGGTTATCTTATCAGGTCTAGTAATTCCTTGCATCATATTGTTATAGTTTTAATACATTTGTTCTATTAAAGCACTGTAAAATTAAATAAATCATCACCTCAAGACTTTTGATGTTATTTTGAAGTGTTCTGCTCCCCCTGGTGGTCACTGCAACATTTACACTTGGCTTATTTTAGAGAGCTTTGACTGGAAAACATAAAAACAGCTTAATCGATAACATTTTTCCACAAACAACCAATGAGTACAAGCAAAAACACAAAAAGAAGAGGCTTAGACATTCTGAAATGGACTAAAACAGCAGTGTTTTAATCATTACTTTAGTCTAATGTAATATAATCCTTCAAAAATGATTCCTCTGCTTATTTGACGGTCTATTATGATCAATTATTATTGGTGCTCAGTCTTAAATAATGTTTTTTATTATAAATGTTGACTTTATTCTTGCTTCATTTTTCTTATACATTTTAGTTTAAGGACTTTTCAAAGAATGAAAGTTACAAATAGCAGCATTTATTTGAAATTAGATGTTTTGTAAAGATATAAATGTTTACGGTCATGCTTGATCAATTTAATTTAATGTCCTTGATGAATGAAAGTATTTTATAAAAGGAAAAATAAACAATTTTTTTTTAATGTTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000068655:ENSDART00000099389:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.571
Domain overlap (PFAM):
C1:
PF051807=zf-DNL=FE(67.6=100)
A:
NA
C2:
PF051807=zf-DNL=PD(19.1=26.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGTGGTTCTCGGACCTGGA
R:
AGGGGGAGCAGAACACTTCAA
Band lengths:
345-1284
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]