GgaINT0126264 @ galGal3
Intron Retention
Gene
ENSGALG00000001881 | DNLZ
Description
NA
Coordinates
chr17:8605738-8606606:+
Coord C1 exon
chr17:8605738-8605877
Coord A exon
chr17:8605878-8606333
Coord C2 exon
chr17:8606334-8606606
Length
456 bp
Sequences
Splice sites
5' ss Seq
GAGGTGCGT
5' ss Score
8.42
3' ss Seq
GCTTTCACGTTGCTGTTAAGGAA
3' ss Score
4.11
Exon sequences
Seq C1 exon
GTGTGCCGGCGCCGCACGGCGCAGAACATCTCCCGCCTGGCGTACAGCCGCGGCGTCGTCATCGTCACGTGCCCCGGCTGCCACAGCCATCACGTGATCGCCGACAACCTGGGCTGGTTCTCCGACCTGCAGGGCAAGAG
Seq A exon
GTGCGTGCGGGCGGGGCGGGGCGGGGCGGGGCGGGGCGGGGCGGGCTGCGTCCCACCCGCTGCCTCACAGCCCTCACTGAGGGCCCGGTGAGGCGCTGCTCCGCGTGCTGCTCGGTTCTCCCTCAGGCTCCGTTCCATCGCTGCTGGGTCCCCCCCAGCTGTGAGCATCTCAGGCACGGGATGCTGTCAGCTCCCTCGTCCTGCCGAACTTCGGTGATTTCCCACTCCTTTTGATGCCCTTAAAAACGAGTTTTGCAGTAATTGCTGAATGATTGATCCTATGGGGTAAGAACAGCCCTACGAGGTCGGGGTAGTCCTGTCTGCTTCCCAGACAGCTTCCAGGAGGATGTCCCATTTCGCTGTGTGGTGTTTGTTACCAAGAGCAAAGCCCCACAGCAGGCTCTTCCCTCTGGCCTTTGCTGTAGCGTCACTGTTGGCTTTCACGTTGCTGTTAAG
Seq C2 exon
GAATATCGAGGAGATCCTGGCAGCCAAAGGGGAGAAGGTGAGACGTGTGCTTGGTGAGGAAGCCCTGGAGCTGCTGCCAGAAGGCGGGGCAGATGCTGGCGGCCCTCAGAGCCCTCCTACAGAGGGAGAAAGTGGGGACCCCCCCCCAGAGACTGACGGCAAGGGACGGACCTGAGTGGGATTGGTGGCGTTCTGCTGATGGCAAGAGAGACTTTCGTGTTTCTGCCTTCATGTCAATGCGCTGTGCTTAGAATAAATGTGGGTGTCCATCTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001881:ENSGALT00000002916:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.690
Domain overlap (PFAM):
C1:
PF051807=zf-DNL=FE(67.6=100)
A:
NA
C2:
PF051807=zf-DNL=PD(19.1=22.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGCGTCGTCATCGTCAC
R:
TCTAAGCACAGCGCATTGACA
Band lengths:
342-798
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]