MmuINT0051742 @ mm10
Intron Retention
Gene
ENSMUSG00000075467 | Dnlz
Description
DNL-type zinc finger [Source:MGI Symbol;Acc:MGI:106559]
Coordinates
chr2:26348121-26351474:-
Coord C1 exon
chr2:26351335-26351474
Coord A exon
chr2:26350559-26351334
Coord C2 exon
chr2:26348121-26350558
Length
776 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
CTGCTCTTACTGTCTTGCAGGAA
3' ss Score
11.52
Exon sequences
Seq C1 exon
GTCTGTGGGACTCGGTCATCCAAGCGCATCTCAAAGTTGGCCTATCACCAGGGCGTGGTCATCGTGACTTGCCCTGGTTGCCAGAACCACCACATCATCGCAGACAACCTAAGCTGGTTCTCTGACCTGAAGGGGAAGAG
Seq A exon
GTGAGGCCAGCTGGGAGGGGTAGGAGACAGTAAGATTGTGGCCCTGTGTGAGCCTGGATCCATTGCCTGGATCTCTCTACCTGGACAGCCCAGCTTCCACGTGGACCTGGAAGCAGTTGAATTTGAACTTCAGATGAACCATGAATGGCCCCAAATATGGCAAACTAGTTCTATGGCTCTACCTCTGTCACTGCCTGACCTCTGATCTCGCCAGGGGCCTTATCAATCTCTAGTGGAGGCTTTTTGTCCTCTGCCAACTCAGGGCAGATGGAAGGGTATGTGTCAGATTATGGACTGGGGCAGCCTTCAGTGGTGTTCCCACTTTTGGGAGAGCAGTGGGGAGGGCCAGGAGTCAGTTTGGAGGCTGTGCCTGATGCCTTCTTAATGTTCTATGAGGAGGGATCAGTGGCAGGAGTAAGGGCAGAGCCACAGAGGAGATAGCCTGTGATAAGTGTGCAGGCCTTGGGTCTCTAGGGTTCGCCTCTTAGACCTGGACTGCAGAGAAATCTCAGCTCTGATATGTAGGGACAAGACTGAAATGCAGGGATGGGTGTTACCTGGTGAGAGGCAGGGCCACGGCCCTTGGTGGTACACTGTACGAGAGAGATGGCTTCTGAGGACTTGTTAACAGATACATTTGGTGAAGGTGCCATTAGGTGCCTGCAAGGTACTGGTGTCACTTGGATGCTGGGACAAGTGTTCCAGGCCCAAGATGACCATGGGATGCCCTTGAGGGAGCCCAGAGTAAGGCTGATGCTGCTCTTACTGTCTTGCAG
Seq C2 exon
GAATATTGAAGAGATCCTAGCAGCCAGAGGAGAGGAGGTACGCCGAGTGTCTGGTGACGGTGCCCTGGAACTGATTCTGGAGGCTGCTGTACCCCCTGACACCCCAGAAGGGGATGAGGATCCCCCCAACCCTGGCAAGATGGGACAGAGCTGATCTGCATACTCCTACAGCTGCAGACTCCAGTCTTCCCAAAAGTCGCTCCCTTCACTTGGAGCCTCACAAGCCTGCTGCTGTTCCTTGTCAGTAAAAAGCCATCACCTCCAGGCACCGGGCCTGGGCTCCTGTTTTTCTCTTGTGAAGTCAGAACAACTCTGTGGCTGTAGGAGCCCAGCCTCATGCCCACCCATGATAGCCACAGTGGTGGCTTCGGGGGTGGCTTTGTCCCAGTGCAGTCGGTCTCCTTCTTAAGTAGGGCTGGATCTGGTCTTGAGTTAGGCTCGTGGCCTCAGGTGGTTTTTTGTTCCTCAGAGCTCTTTACTTCTTCCTTCTATATGACCTGCCTCCACCCCCACCCCACCCCCAGCCCTGGTGGCTTCTGTTGTTGAGCTAGTGTCCAGCCCAGCCCTGAGGTTTGGTTTCTGTAGCAGAACTGGCTGCTCTGGGTGGCCGCCGAGGAGCAGAGCGCTGCTCAGAGGCTTAGGGGAGTGATCCAGGCAGAGGCACACCACACACACACACACACACACACACACACACACACACCACACCACCCATGAGCTGCCTGCACCTCTCAATCCTCCTGTCTTGAGGTCCAAGAGGAGATGCATGGAAGTGATGAGGGCCGTATCATGCTTGCCTTGTGTGTGCTTCATCTCCTAACTTGGTTTGACATGCCTTTGGGATAGTCTTGTGTTTAGGAAGTCAAGCAGATGCACAAACAGGCTTTTTGTGGGAGTTTCTGGGCCCTGTGACCTTCAACATCTGGCAGGGGGGATCCTGGGACAGGGGGTGGAGAAGGCAGTTGACACGGACACAATGCTTCCCTGGCTCCTGGGACCCCAGCTAGTGATTAGCAGTTCACTCTGGGCCCTGGGAGGCCGGGTGCACTTGCAGTCTGTGCCTTCCCTCGATTACCCCCTGTCCTTCCCTCAGCAAACACCCTGCTATTATCCCCACCCTAGCCTCCTGTGCCATTTGTACAAACTGTCACATCCTGGAGGAAGAGCCAGCCTCCGACTCCAGCCTGCTCCCTGTGGAGGACACCGAGGTCAGAGGAGCCGATTGCCTTGCTTGTGGGCCTTCAAGTCAGGAACCAGTGGAGCCTGGCTGGGCTGCCTCGTCCTCAGGTGTCTGGGCCAGAGTTGTCGGAGGCCTGGGGCTGGCTAGACCTGACAGTACAGAGCTGGATCTAGCGTATCTCCTCTAGATGGGAAGCCCATGATTTGGACTTACCTCCTGTGTGTGTGTGCCTTCTGCCTGTTGCTGCTCCAGAGCCTCCTTCCCAGGGAGGGTCTCCTGTGCATCAGGATTTCACTTGAAGCTTCACTTTCCACATAGTCCATTCTTGCAGAGTCCATACCTCACCGTGTTCTGCAGACTCACCACGGGCCACAGTTCCCAATCATGTGGCCAGGTTCCTGACAGCCTGGAATTGTTCTGACTAGTTTAGTTCTCCATTCCTTCCTCCCTTTCAGTGGAGACTAAGTAAAGTACCACCCCAACATCACAGCACCTCTTGGCCAGACCAGCGTGACTCCTGTGGGGTGGCTTGGCTCTCTCAATACATCCCCTTCCCATGGCAGCCATCTCTGGCAGCTGGCCTCCCGGCACCTGAGCAATTTCAGCCTGCCCAGAAGCGTGGCTGCCTCTAGAGCAACCACAGTGCTCTAGACGATAGAGAATTCTCTAGGCTATTTTACTGGTCTTAGCTATGTTCTGCTACCCTTGGCCCATCAGGACACTCCCCAAAGGGCCCAATCAGGATCTGAGTTACATGGGGTGCTGCCCACTACATGAACATTGAAGACAAGTTCCTCTGTGGCTTAGATTGGCATAATCCAGCGCTTGTAATGGGAACTGCTAAGACATAGGAAGCTCTGGGGCTGGGTCCAATCCAGTCGGGGGCGGGGAGGCTGCTTGGAAGGGCTAGTCCTGAGTGTTTACCAATGTACTGTGACATCCCTGGCTTCTGTTTCCTGTCTCTGGAAAGTCAGCATAATGGAGAACAGCAGAGAAAGCAGCAGTAGCGGCTCTGGCCCCGCCTCTCACTGTCGCATGCAGCAGAGACATGCTGCATGATCTCAGGGGCCTTGTACACTGCACTGGGTAAGCCAATACCATGTCCTGGGAAGGCTGACACAAATTCCAACAGAAGCCACACTCACTTGGCAGACTTTTATTTTTGGGTAAAACAAAACAAATGTACCTCTCGGGTCAGAAAGGACCCATGAACAACATGGCAAACACATGTAAGCAATAAATACGCATGTACATTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000075467:ENSMUST00000028295:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.471
Domain overlap (PFAM):
C1:
PF051807=zf-DNL=FE(67.6=100)
A:
NA
C2:
PF051807=zf-DNL=PD(19.1=25.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGCGCATCTCAAAGTTGGC
R:
GCTTGTGAGGCTCCAAGTGAA
Band lengths:
345-1121
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types