HsaINT0050623 @ hg19
Intron Retention
Gene
ENSG00000213221 | DNLZ
Description
DNL-type zinc finger [Source:HGNC Symbol;Acc:33879]
Coordinates
chr9:139256352-139257580:-
Coord C1 exon
chr9:139257441-139257580
Coord A exon
chr9:139256633-139257440
Coord C2 exon
chr9:139256352-139256632
Length
808 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
GTTGCCTCCCTGCCCCCCAGAAA
3' ss Score
8.36
Exon sequences
Seq C1 exon
GTCTGCGGGACTAGGTCCTCCAAGCGCATCTCCAAGCTGGCCTATCACCAAGGCGTGGTCATTGTGACCTGCCCCGGCTGCCAGAACCACCATATCATCGCTGACAACCTGGGCTGGTTCTCGGACCTGAATGGGAAGAG
Seq A exon
GTGAGGCCTGTACCCCAGGGCTGGGCCAGAAGGCCACCCAGAAGTACCCTGGCCTCCCTGGGGGAACCTTGCCCTAGTGTTGAGGTTTATAGATCTCACCTGGGAAATCCAGCCACCTTATCAATACAAGACACACAGTTAAATGAGAATTTCCTATAAAGCCCAGATAGCTTTTGAGTTTAAGTATGCCCCAAGTAGGGGGTGCGTTTTTATTTGTTAAATTTTGCCAGCCCTGTGGCCCTGCCTCCCTGCCTCTGCCTGCCCTCTGCCATCACTGGCAGCCTTGTCCCTCTCTAGCGTGGAACTTTTTTGCCCTCTGCCATCTTGGGGTGGCTGGCCCACAGCAAGGCTTGGGGTGTGGACCAGGAGGTGTGGCCTGGGCCCTGGCTGCTGGGAGAGCAGTGGAGGTGGTGCCGGGAGCCTGGTCCGGGCCTTGCCTGGCCGGGAGGTCCTGGGCAGGACAGTAACAGCGACAGCAGGTCTGAGACCAGCATGCCAGGTGCTTGGTGGTACCTGGCCCTTGGAGCTGGGACTGTCCTCCCATCAGACCCGGGGCTGCAGATTCTTCCCTCTGGCACATAGGGGGCAGGAGCAGGAGACTGGGTTCCTGAGGCGGCGCATACCGGCAGAGACACAGGGCTGGTGAGGGCACACAGGCCAGCGTCTGAAGTGCCCGTGTGGCCTGATGCCACAGGAGTGCTGGGCCTGGTGCTTGCAGCTCTGGCCTGGCCATGGGGCGCCCTGAGGGGACTGAAGTGCAGGGCGGCTGGGGGGCCCTGAAGAGCCATGTTGCCTCCCTGCCCCCCAG
Seq C2 exon
AAATATCGAAGAGATCCTGACGGCCAGAGGCGAGCAGGTGCACCGTGTGGCGGGCGAGGGGGCCCTGGAACTGGTTCTGGAGGCTGCAGGGGCCCCCACATCCACTGCAGCTCCGGAAGCGGGTGAGGATGAGGGTCCCCCCAGCCCTGGCAAGACGGAGCCGAGCTGACTCCTGCGCTCCCCGGCACTGTGGGACTTCGGCCTTCCAGAAGGAGGTTTTGGCCCTGGGCCTCTCTGGACGTGGCCTGTTTTCTATCAATAAACAGACATTACTTCCAGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000213221-DNLZ:NM_001080849:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.584
Domain overlap (PFAM):
C1:
PF051807=zf-DNL=FE(67.6=100)
A:
NA
C2:
PF051807=zf-DNL=PD(19.1=22.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATCTCCAAGCTGGCCTATC
R:
CAGGGCCAAAACCTCCTTCTG
Band lengths:
342-1150
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)