MmuEX0015277 @ mm10
Exon Skipping
Gene
ENSMUSG00000075467 | Dnlz
Description
DNL-type zinc finger [Source:MGI Symbol;Acc:MGI:106559]
Coordinates
chr2:26348121-26352100:-
Coord C1 exon
chr2:26351773-26352100
Coord A exon
chr2:26351335-26351474
Coord C2 exon
chr2:26348121-26350558
Length
140 bp
Sequences
Splice sites
3' ss Seq
CACCTCTCTAACCCAGCTAGGTC
3' ss Score
2.35
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
GCTTCCGGCCGCTGCGCCCGTTACCAAAATGGTCGACGCAGCTTCACGGGGCGGTGCAAGAAAAGGTGGCTAAGGATTCGCAGGCGGGATGTTGCGGACAGCGCTGAGCCGCATGCCGACACTACTTCGTAGTGTGCGGACCCGGGATTCCGGACCGCGGCGGCTTTGGGATTTGGGGGCTCGCCTAAAGACCGCGGAGAGACTTCGGGGCTGGGCCTGGGGCTGGGCCTCGGGCTGGCGGAGCTCGAGCTCCGCGCCGGGATCAGGGCGTGCGGCGGCGCTGGGGCGCGTGGAAGCGGACCACTATCAACTCGTCTACACCTGCAAG
Seq A exon
GTCTGTGGGACTCGGTCATCCAAGCGCATCTCAAAGTTGGCCTATCACCAGGGCGTGGTCATCGTGACTTGCCCTGGTTGCCAGAACCACCACATCATCGCAGACAACCTAAGCTGGTTCTCTGACCTGAAGGGGAAGAG
Seq C2 exon
GAATATTGAAGAGATCCTAGCAGCCAGAGGAGAGGAGGTACGCCGAGTGTCTGGTGACGGTGCCCTGGAACTGATTCTGGAGGCTGCTGTACCCCCTGACACCCCAGAAGGGGATGAGGATCCCCCCAACCCTGGCAAGATGGGACAGAGCTGATCTGCATACTCCTACAGCTGCAGACTCCAGTCTTCCCAAAAGTCGCTCCCTTCACTTGGAGCCTCACAAGCCTGCTGCTGTTCCTTGTCAGTAAAAAGCCATCACCTCCAGGCACCGGGCCTGGGCTCCTGTTTTTCTCTTGTGAAGTCAGAACAACTCTGTGGCTGTAGGAGCCCAGCCTCATGCCCACCCATGATAGCCACAGTGGTGGCTTCGGGGGTGGCTTTGTCCCAGTGCAGTCGGTCTCCTTCTTAAGTAGGGCTGGATCTGGTCTTGAGTTAGGCTCGTGGCCTCAGGTGGTTTTTTGTTCCTCAGAGCTCTTTACTTCTTCCTTCTATATGACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000075467-'0-3,'0-1,4-3
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.025 A=0.000 C2=0.471
Domain overlap (PFAM):
C1:
PF051807=zf-DNL=PU(10.3=8.8)
A:
PF051807=zf-DNL=FE(67.6=100)
C2:
PF051807=zf-DNL=PD(19.1=25.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATTTGGGGGCTCGCCTAAAG
R:
GCAGCCTCCAGAATCAGTTCC
Band lengths:
246-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types