MmuALTA0005681-2/3 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000075467 | Dnlz
Description
DNL-type zinc finger [Source:MGI Symbol;Acc:MGI:106559]
Coordinates
chr2:26351335-26352100:-
Coord C1 exon
chr2:26351773-26352100
Coord A exon
chr2:26351424-26351474
Coord C2 exon
chr2:26351335-26351423
Length
51 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGC
5' ss Score
7.93
3' ss Seq
CACCTCTCTAACCCAGCTAGGTC
3' ss Score
2.35
Exon sequences
Seq C1 exon
GCTTCCGGCCGCTGCGCCCGTTACCAAAATGGTCGACGCAGCTTCACGGGGCGGTGCAAGAAAAGGTGGCTAAGGATTCGCAGGCGGGATGTTGCGGACAGCGCTGAGCCGCATGCCGACACTACTTCGTAGTGTGCGGACCCGGGATTCCGGACCGCGGCGGCTTTGGGATTTGGGGGCTCGCCTAAAGACCGCGGAGAGACTTCGGGGCTGGGCCTGGGGCTGGGCCTCGGGCTGGCGGAGCTCGAGCTCCGCGCCGGGATCAGGGCGTGCGGCGGCGCTGGGGCGCGTGGAAGCGGACCACTATCAACTCGTCTACACCTGCAAG
Seq A exon
GTCTGTGGGACTCGGTCATCCAAGCGCATCTCAAAGTTGGCCTATCACCAG
Seq C2 exon
GGCGTGGTCATCGTGACTTGCCCTGGTTGCCAGAACCACCACATCATCGCAGACAACCTAAGCTGGTTCTCTGACCTGAAGGGGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000075467-0-2,0-1,0-0-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.025 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF051807=zf-DNL=PU(10.3=8.8)
A:
NA
C2:
PF051807=zf-DNL=FE(67.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAAGCGGACCACTATCAAC
R:
TTCCCCTTCAGGTCAGAGAACC
Band lengths:
124-175
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types